MidgeBase gene description page [Pn.01538]
Outline
| Gene ID | Pn.01538 |
| Type | Protein coding gene |
| Scaffold | PnScaf1406 |
| Start | 60246 |
| End | 63195 |
| Direction | - |
Sequence
Transcript: 2508 (bp)
ATGATGGAGAAGGAACCGTTTTTCGATGAGATTTGTACAAAACTCTCGATCGATTCCGCAGTGAGAAAAAATGCATATTTGCAATTCACCGAAGTCTCTCGCAATACAATTCTGGATGGAGATATGCGGCACTGGATTTGCTGCGCGATTTTTACTGCATGTGCTAAACAGAAAATTCCGACTGTTGTGGCTAGCGAGACTTTTGTTCAGGGCAATGGCATTTCGCTAGTGAAACTCATTAACGAATGCAATCTAAACATTTACACCTTCTTCGAGAAGATCGAAGTTTGGTTCAAGGTGTCCTCGGTACCGAATGCCATCCAACAGAAGGTGGAGGTTCTCAAGAGGAACTTTCAACTGTCGCAGTTGATATTTAAGGACTTTACCAATATGTTTACGAAGCTCTTCAACTGCAGCGACGGGCTGACTATTGAGGAGCCCAAGCCCACTAAAAGCAGGAAGAAAATCAGCAATGTACCGATTACATCTGCAAAGTTATTTGAAATGTGCTGGACACTCTTTGTTTGCGTGAAAGGATACTCTCCGAGCGAGAAGCCAAGCGATTTGGTGACATCCATCAACCTTCTTCTGTGCTGCATTGATTTAATTTTTGCAAACGTAGTGAGCGATAATCGACGTGATCTCATCAACTCATCATTCGATGGCCTACCAAAAAAATTTTTCTCTGCGTCGTATGATCCTTCGAAGGAACCGACAATTAGCATAATTGATAAACTCTCAGACGACACAATCATCAAGATGAAGAGCACGCACTGGGAGCTCGTCATCAAACGATTCCTCACGGAAAAGAATATCCAAGGCGACTCCAACTCGATAATTGCCGTGGAAAATTTCGAGTCCAATTTTAGAACTCTCAACTCTCTCTACGAGACGTTCATCCTGAGCTGTGGACAATTTGACGAGCGTGTCTTTCTCTATGCTAAGCCAATTGCCGTTCAAGGGATGAACTCTTCTCAGTTGATACCGCAAACGCCTCTAAGTCACCAAAATCTCTTGCATCATTCAGCGACACCGTCGTCGTCTAGTAAGCTCTCGCCTATTTCGAGTTACAAACAAAATCTGCAGAAACTGCAGGCACTTTACAACAGCAGTCAGTGCCAACCACCTAGTTCACTGAAAACGTTGCTTTGTTCATGCTCTGACTCGATCCTTGGCGAACTCGCAGAGCGACTTGAGCGAATGAAGGAGATTTTCTGCACGAAAATGATGCCGAACGGACAAGACCGTTTTCAAATTGCTGAGGCACTCTACTATCGCCTGCTAGAGAACATAATTCATTCTGAAATGAAGACTCATGGACGATTCGATCTCTTTATCAATGATGATGTTTTCAATCAAACGTTGATTGTCCTGTGCTTGGAGATTGTGCTCTTCGCATTTTCCCTGCACAAGAAGCTTACGACTCTTTTGGAGTGTTTCAATATGGAAGCTTTTAATTTCTATAAGCTCATCGAAGTGACCATTCGAAACAACAAGGACTATTTCACGAACGACATCATAAAGCACCTGAAGGCCGTCGAGGAACAATGTCTGGACTCGTTGGCTTGGGTTTCCGGATCATTGCTGTGGGAGAAGATTGGAGAATACAATGGAAAGCTGCCTACAAACCAAGAGGTGGATGCCTCAGCGCAAACCAACAGCAATAGTCCGAGCAGTCAAACACCGAAAAGCATCAAGCTTTTCTTCAGGAAGTTTTATCAACTGGCTCATTTGCGTTTGAAGGATCTCCACAAAAATTTGCAATTCACAAATGACACTGATTTGTTGAGAAAAATCTGGACATTATTTGAGTACGCAATACTCGAGCACACGACTCTTATGAAGGACCGTCACTTGGATCAAATTTTAATGTGCTGTGTTTATGTTTTGTGCAAGATTAGGCCTAATGAGAATCATCATACGTTTGCCGACATTATGAAATTTTATCGCAATCAGCCCCAGGCTGACTCGCACATTTATAGAAGCGTTTTCATCGAGTATATTCCGACCGAAAAGGTTGCCGAAAAGCTAGAAGCGAGAACGAGACCGAACGCCACTGAACCAGAGGTCGTCAGCGGTCGAAATACTATTTATGGAACTGAGTCGCGAGGAGACATCATTTATTTCTATAACAAGATTTTCGTTCCGAAAATGCAGCAGTTTGCAATGAGATTTTCAACTTCATCACAAAATAATTTGCTTTTGTCTCCATTGCCTCAATCGCGACCATTGATCTCGCCTAGAAAGATTTCACCATATCATGATGTTTATGTACAACCGCTGACGAAACAAAGTATTTTATCGCCATCTGCACGTACTCTAACATTCACGATTGAACAAAGTCCGTCGAAGGACCTTCAAAAAATCAATTCCATGATTAATCAGAATAAAAGGGCGAGCGTTGCGAAGCGCTTCATGATGGACTCTGAGGATGATTTTCGTCAATCAAAGGTTCCGAAGGACTCGTCAATACAGCTCCTAATCTCCGATCGTGAAACCATTAGCAAC
Protein: 836 (aa)
MMEKEPFFDEICTKLSIDSAVRKNAYLQFTEVSRNTILDGDMRHWICCAIFTACAKQKIPTVVASETFVQGNGISLVKLINECNLNIYTFFEKIEVWFKVSSVPNAIQQKVEVLKRNFQLSQLIFKDFTNMFTKLFNCSDGLTIEEPKPTKSRKKISNVPITSAKLFEMCWTLFVCVKGYSPSEKPSDLVTSINLLLCCIDLIFANVVSDNRRDLINSSFDGLPKKFFSASYDPSKEPTISIIDKLSDDTIIKMKSTHWELVIKRFLTEKNIQGDSNSIIAVENFESNFRTLNSLYETFILSCGQFDERVFLYAKPIAVQGMNSSQLIPQTPLSHQNLLHHSATPSSSSKLSPISSYKQNLQKLQALYNSSQCQPPSSLKTLLCSCSDSILGELAERLERMKEIFCTKMMPNGQDRFQIAEALYYRLLENIIHSEMKTHGRFDLFINDDVFNQTLIVLCLEIVLFAFSLHKKLTTLLECFNMEAFNFYKLIEVTIRNNKDYFTNDIIKHLKAVEEQCLDSLAWVSGSLLWEKIGEYNGKLPTNQEVDASAQTNSNSPSSQTPKSIKLFFRKFYQLAHLRLKDLHKNLQFTNDTDLLRKIWTLFEYAILEHTTLMKDRHLDQILMCCVYVLCKIRPNENHHTFADIMKFYRNQPQADSHIYRSVFIEYIPTEKVAEKLEARTRPNATEPEVVSGRNTIYGTESRGDIIYFYNKIFVPKMQQFAMRFSTSSQNNLLLSPLPQSRPLISPRKISPYHDVYVQPLTKQSILSPSARTLTFTIEQSPSKDLQKINSMINQNKRASVAKRFMMDSEDDFRQSKVPKDSSIQLLISDRETISN
| Type | Start | End | Length |
| CDS |
60249 |
60404 |
156 |
| CDS |
60470 |
60919 |
450 |
| CDS |
60983 |
62414 |
1432 |
| CDS |
62482 |
62694 |
213 |
| CDS |
62759 |
62898 |
140 |
| CDS |
63079 |
63195 |
117 |
| intron |
60405 |
60469 |
65 |
| intron |
60920 |
60982 |
63 |
| intron |
62415 |
62481 |
67 |
| intron |
62695 |
62758 |
64 |
| intron |
62899 |
63078 |
180 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002425155 |
P107, putative [Pediculus humanus corporis] gb|EEB12417.1| P107, putative [Pediculus humanus corporis] |
1e-122 |
| InterPro |
IPR002719 |
Retinoblastoma-associated protein, B-box |
|
| InterPro |
IPR013763 |
Cyclin-like |
|
| InterPro |
IPR024599 |
Domain of unknown function DUF3452, retinoblastoma-associated |
|
| InterPro |
IPR002720 |
Retinoblastoma-associated protein, A-box |
|
| Gene Ontology(BP) |
GO:0051726 |
regulation of cell cycle |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Pfam |
PF01857.15 |
Retinoblastoma-associated protein B domain |
3.3e-40 |
| Pfam |
PF00382.14 |
Transcription factor TFIIB repeat |
0.031 |
| Pfam |
PF01858.12 |
Retinoblastoma-associated protein A domain |
2.9e-39 |
| Pfam |
PF11934.3 |
Domain of unknown function (DUF3452) |
2.2e-29 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS214677PA |
| B. mori |
BGIBMGA001949-TA |
| P. vanderplanki |
Pv.04802 |
| N. vitripennis |
NV15596-PA |
| H. sapiens |
ENSP00000343646 |
| S. invicta |
SI2.2.0_13137 |
| A. gambiae |
AGAP006477 |
| A. mellifera |
GB19508-PA |
| M. musculus |
ENSMUSG00000027641 |
| H. sapiens |
ENSP00000262133 |
| C. quinquefasciatus |
CPIJ017294 |
| H. sapiens |
ENSP00000444685 |
| D. melanogaster |
FBgn0015799 |
| T. castaneum |
TC009105 |
| P. humanus |
PHUM177400-PA |
| H. sapiens |
ENSP00000443744 |
| M. musculus |
ENSMUSG00000031666 |
| A. aegypti |
AAEL000128 |
| H. sapiens |
ENSP00000362768 |
| H. melpomene |
HMEL007687-PA |