MidgeBase gene description page [Pn.01419]
Outline
| Gene ID | Pn.01419 |
| Type | Protein coding gene |
| Scaffold | PnScaf1357 |
| Start | 11623 |
| End | 13203 |
| Direction | - |
Sequence
Transcript: 1281 (bp)
ATGGAGAAGGAAAATAGCCGAGTTTTGCTGGCCTATTCGGGCGGGCTCGATACGAGCTGCATTTTGAAGTGGCTCTTGGAAAAAGGCTACGAAGTAGTGTGCTTCATGGCTGATGTGGGCCAAGAAGAAGACTTTCAGGCGGCCAAAGACAAAGCCATAAAAATTGGAGCAACCGACTGCGTGGTTAAAGACGTTAAGGCTCATTTTGTAGAAAATTTCGTGTGGCCAGCTATTAAGATGGGAATCATTTATGAGAAGCGTTATTTAATGGGAACTTCGCTGGCTCGGCCTTGCATCACATTGGCACTCATGGAGACGGCGCAAGAGTTCAACTGTGCTTTCATATCCCACGGAGCGACTGGCAAAGGCAACGATCAGATTCGCTTCGAGCTATCGGCCTATGCGTTGAATCCAACAATCAAGGTTATTGCACCGTGGCGTCTTCCCGAATTTTGCGAGAGATTTCAGGGCCGTAACGACTTGCTCGAGTACGCCAAAGAAAACAACATTCCGGTCGCTGCGACATTAAAGTCGCCATGGTCCATGGACGCCAACATAATGCACATCAGCTATGAGTCGGGTATTTTGGAAGATCCCTCGGCGTCCGCCCCCGACGACCTGTTCGTAATGACGAAGGATCCGCAGAACTCGCCCAACAACCCCGTGCGCGTCGATGTCGTCTTCAATCACGGCGTTCCGGTTCGCTGTACGAATTTGACAACTGGCTACACGTGCGAGCAAGCGTTGCATATTTTGCAGTACTTGAATCAAATTGGCGGTGAACACGGAATTGGCAGAATTGATATTGTTGAGAATCGATTTGTTGGCCTAAAATCGCGCGGCATTTACGAAACGCCTGGATGCAAAATTCTCTACGAGGCTCACACCGATCTTGAAGTGTTTTGTCTAGACAGAGAGGTCTTGCGCGTCAAAAGCTCTCTGGCCGAGAAAATGGCCGAATACATCTACAACGGATTTTGGTACTCGCCCGAGGCTGAGTATGTGAGAAAGTGCTTGGACGAGTCGCAGAAGTCCGTGAACGGTCGTGTCTCGCTGGAGCTGTTCAAAGGAAACGTTTCGGTCATAGGACGCGAGTCGCTCAGCTCGCTCTACAATCAAGAACTCGTTTCGATGAATGTCCATGGCGAGCTAAATTATACTGCTGCAACGGGCTTCATCGAAATCAATTCTATTCGTCTCAAAGAGCATTACCGCGCGCATGGCTCAACGGCAAATCACTATAAGGGCTTGAGCCGTAACTTTTCACGTGTAAAACTTAAT
Protein: 427 (aa)
MEKENSRVLLAYSGGLDTSCILKWLLEKGYEVVCFMADVGQEEDFQAAKDKAIKIGATDCVVKDVKAHFVENFVWPAIKMGIIYEKRYLMGTSLARPCITLALMETAQEFNCAFISHGATGKGNDQIRFELSAYALNPTIKVIAPWRLPEFCERFQGRNDLLEYAKENNIPVAATLKSPWSMDANIMHISYESGILEDPSASAPDDLFVMTKDPQNSPNNPVRVDVVFNHGVPVRCTNLTTGYTCEQALHILQYLNQIGGEHGIGRIDIVENRFVGLKSRGIYETPGCKILYEAHTDLEVFCLDREVLRVKSSLAEKMAEYIYNGFWYSPEAEYVRKCLDESQKSVNGRVSLELFKGNVSVIGRESLSSLYNQELVSMNVHGELNYTAATGFIEINSIRLKEHYRAHGSTANHYKGLSRNFSRVKLN
| Type | Start | End | Length |
| CDS |
11626 |
12128 |
503 |
| CDS |
12185 |
12539 |
355 |
| CDS |
12663 |
12772 |
110 |
| CDS |
12832 |
12991 |
160 |
| CDS |
13051 |
13203 |
153 |
| intron |
12129 |
12184 |
56 |
| intron |
12540 |
12662 |
123 |
| intron |
12773 |
12831 |
59 |
| intron |
12992 |
13050 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863223 |
argininosuccinate synthase [Culex quinquefasciatus] gb|EDS38293.1| argininosuccinate synthase [Culex quinquefasciatus] |
1e-178 |
| InterPro |
IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
|
| InterPro |
IPR018223 |
Argininosuccinate synthase, conserved site |
|
| InterPro |
IPR023434 |
Argininosuccinate synthase, type 1 subfamily |
|
| InterPro |
IPR024074 |
Argininosuccinate synthetase, catalytic/multimerisation domain body |
|
| InterPro |
IPR001518 |
Argininosuccinate synthase |
|
| Gene Ontology(BP) |
GO:0006526 |
arginine biosynthetic process |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004055 |
argininosuccinate synthase activity |
|
| Pfam |
PF03054.11 |
tRNA methyl transferase |
0.056 |
| Pfam |
PF00764.14 |
Arginosuccinate synthase |
3.3e-148 |
| Pfam |
PF06508.8 |
ExsB |
0.0015 |
| Pfam |
PF00733.16 |
Asparagine synthase |
0.038 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS213077PA |
| A. mellifera |
GB18646-PA |
| P. vanderplanki |
Pv.10355 |
| S. invicta |
SI2.2.0_80105 |
| H. sapiens |
ENSP00000361470 |
| H. sapiens |
ENSP00000361461 |
| A. gambiae |
AGAP003015 |
| H. melpomene |
HMEL009769-PA |
| D. melanogaster |
FBgn0026565 |
| M. musculus |
ENSMUSG00000046687 |
| M. musculus |
ENSMUSG00000076441 |
| C. quinquefasciatus |
CPIJ012882 |
| N. vitripennis |
NV14572-PA |
| A. aegypti |
AAEL004701 |
| T. castaneum |
TC011361 |
| H. sapiens |
ENSP00000361471 |
| H. sapiens |
ENSP00000253004 |
| H. sapiens |
ENSP00000361469 |