MidgeBase gene description page [Pn.01404]
Outline
| Gene ID | Pn.01404 |
| Type | Protein coding gene |
| Scaffold | PnScaf1347 |
| Start | 16485 |
| End | 20787 |
| Direction | + |
Sequence
Transcript: 3753 (bp)
ATGGGCGAAGCAATTGTCGACGATTTGTGGACTCCGTTCAAGCAGCTTCACCATCAAATACAGTCATTTCTCGTGACGAACCCGCAGGAAGTCAATCTAGCCAGCGTTGAGGCGCTGTTAAGGAAAAATAAACAAAATTTCTCATCGCTTCTCACAAATCCTCCAAAGAATGATGGAAGTCGCAAGGAAATTATGCAAGGCGTTACGCACGGAATCACACTGCCAACGTTGGGACCAACGACACTCTCAAAAGACTTGGTCGACGAAACAGTCATTCTCTCCGACATGTACAATCTAAATGAGTTTATCGCCCTTGAGCTGCTTACAACCGCTCAACAACAGATGCCACAATATCCAGGCCTGCCACGAGGTTTGGTCGCCATCCTCCTCTATTATGACGGAAGAAAAACATTAACGACAGCTCTAAAAGACTTGATGCAAGCTCGCCTCGGCGTATCGTGGTGCACCGACGGCGTCCCTGTAGAAATAATTCACTTGGTGACCACGTACACCGACTCACTAGTCGCAGAGGGCATTCTGAAGAAAGCCCTTGAACTACTAAAGACACTCGACATCAGCAAGGAACTCGATTTGTTGACGAAAAATCGTGCTCTTGGACCTCCGAAACACCACCGGATGGTGCTCGACTTGTTCGAGGAAATTCGCCAGAACCTCGCCTCAATAATTTTCAACTATGCAGCACAATCGGGACTGCCAAAAGATGTCACACTCGCCCTCATTCAATATCTTAAAAAGTCGAAATTGAGTGGCGCACGAGGCGAAATTGGAGATGTGACAACGACCCTCATGATGGCATTGTTCTATGCACTCGACTTGAGCATAATTCATCGACGAGAGGACGGGGAAGATGTGGTTCGCCGATTGCCGATAGTGAACGATGATACTTTCTTCGATGATGTCATGCAGGAGTTGCTTATTAATGAAGATGCGCCAGACGTGGCCGAGAAGTGGGAATGTCCGGGTTTGCGCGCCCTCGCGATTTTCGCACTGGGACTGGCGTGCGGGACGCTGAAGATGGCACCGCAAAGCCTATGCAGAAGCGCTCAGCAGCTCATCGAGAAGGACGAGGAGCTCATCGATTTTGCCATTCATCTCAAAGTGTTTGACTTCCTGAACTACACGTTTTTGGAAAACACGATTGTTTTTCGAACGGAATTTTTCTATCGTCGCCTCCACGTTCTCTTCACGGATTTCATCGAGATTATGCACACGAAGGTAACGGAATTGAGAAAGCGAGCCGACGAGACGGCACGAACGGTTCAAAACTATCAGCAGCAGGGACTCGAGCCGCCGAGCAATGTCGACAACAATTTCGCAAATTTGCTCCTCGCCATCGGAAAGTTCTACGAGAATGATCGCTTGGGGTTGCAGCTGAGTCTGGAATATTGGGGACCAATGGAGCACAGCGGCACTTACCATCGAACATCATCGCGCTCCGTTTGTTTGTTCAAATTTATGCGCTTAGCCGGTGATTTACTGCCCAAAACGCTCTTCATACCGTATCTGAAAATGCTGGCGGGTCTCTCGGGAAATCCTCAAGCCGCACGAAATGCATTCAATTTGCTCAAGCAGGGCAATGGAAGTGCGGGCACAGCGTCTGTCTCGTGGGATCATTTCTTTGCGTCTTTTGCCAGATACTATCAAACGCTGAAGAACGAGCAGCAGCCCGGAACTGACACAGTTTACCGTTCAAGACTGTACTCGCGAGCGATAAGTCCGCAGGAAATTGCGGGCTTACAGGCCGTGCTTCAAGTGATTCGAGTGGTTGCCACTCACGATGAAGTGGCGAGGATTGCGTTGTGCGAGCAGCCAAATTATTCACCGATTCCCGTCATGCTGGGCCTGGTGAGCTGCTCGATTGTTATTCCACTGAAAGCGAGTCTCGTCTCGGCACTCGCTGCGCTCGGACGTTCGAGCGAAACGGCAATTCAATTGTGGAATTCGCTGGAGACATCACAAATAATTTGCACCGTGCCGTCGGTGAGCAACTTCGGAAATCGAGGCATCGAGTCGGAGTTGGAGGAAATTGAGGCGAGAAACGAGACTTATCCGCTGACAAGGGCCGTCCTCGATCTGCTGTACACCATTTCGAGCGTGATTATTCCAAAAAATCTCGGCGCCGGCTCGAGAAAGACCGGCCTGGATCCATACGTCGTTTTCATCATCGAGACGGTGTTTTTGAAGTTCTACAATCGCAACTACAAGGACTCGCAGGAGAAGTGGGAGGTGGCCGAGAAGTGCCTTCAAATCTGTGACATGTTCATAAAAATCTACGACATCTCGCCACACGACTTTCCCAATGCCCTCGGGCACAATGAGGAGAACTCGCCGCCCGGCTTCCACATCATGCTACAGCTGCACACAAAATCTGAGTTTCTGCGTCTCGTTCTTCACTTGATCGATGAGGCGTGCGTCATGCTCGACTCATACTCGCCATTCGCCGGAAAGAAGCAGCTCGAGAATACAATTCAGTACGCGCTCAACATCATCTCGATGGGCCTGGACAAGCAGAATATTTTCTTTGAGGCGCACTTTGCCGCCAACAGCTCCATCCTCATGACGGGCTGCTCGAAGCTTCTACTCGAGGTGAATCCCCGAACGGGAAAGAGCGACCACGTGCTCAACATCACGAAGATGGTGATTTACAACTCGTGGCTGCCACGGCAGGCACTCATGGCCGTAAAAATTCTCCACCATATCATCCTGCAGCCCAACGTGAACAGCCAACTGCTCGGCATTCTGACAAGCAATGAGCGCGTGAAGTTGGAAATTCGCCAAGGCTTCGTCGAGTGCCTCGAGAACGACGTTGATCTCGACTGCGAGCCGGAGAATGCACTTGCACTCGAAATGGAAATCAAGGAGGAAATCATTAATCTACTCAACGATTCACTGCCTCAGTCGGCACCAAACATCGCTCATTATCTGTTGGGCTTCGACATCAGCAAGGACATTCGCCTGAGTAATTTGCAGCAGCCGGGCGTGCTGGACTTCCCAACCACCTGCTCGAAGTCCCTCGTAAACATCCTCGATCAATATTTGGAGGGCGTAAAAGTGAGCGCTTCCGTGCCCGAGCAGCGATTAAAGCTGATTGAAAATGCGTACGGCTTGGTCTACAGTCTGTGCTACAATTTCCGAACGTCCGAAGTCTTTATGCGATTTTTACGTTCGACGGGTGACTTTTTATGTCGTCACGTAGCCGAATTGCCGTTCTCGCTCGACAGCAGCCCTCATGTCTTGAATCAAATGACGGCCCTCCTAAAGAGCGCTGCGATTGAATTGAAACTCACAGCCGAGAAGAATCAACTGAGCCATTTCAGTAATATGTGTCGAATTTTGGGTCTGCTATCAAACTCAAATTACACCGATAACGTGCAGGTTGAGTTGGGCCATTACCAGCAGTCGCTTGTCGGAATGGACTCCATGCAGATGTCGCAGAAGAAGAACAAGGCGTCGAAGATGCTGTGCGAGCTGTTGGATAGCCTCGAGTTCGAGCTCAAGCCGCTCGATCGTCCCAAGTGGGATTACTTTGACAACTCACTCATGAACAATTTGTTCGCAAACTGCGAGACCGTCGTTTCGTCGAGCGGCATAAAGCTGATTGATGTGAAACGAGTTCACGCGATTTTGAGGGAGGAGCTCAACTCTGTGCAGGCGACGATTGCGGCGGTCCAACCAGCAGAAGCTTCTGATCAACGCCAACGTCAAATTTCTCGAGGCATGGAGTCAGGTTAC
Protein: 1251 (aa)
MGEAIVDDLWTPFKQLHHQIQSFLVTNPQEVNLASVEALLRKNKQNFSSLLTNPPKNDGSRKEIMQGVTHGITLPTLGPTTLSKDLVDETVILSDMYNLNEFIALELLTTAQQQMPQYPGLPRGLVAILLYYDGRKTLTTALKDLMQARLGVSWCTDGVPVEIIHLVTTYTDSLVAEGILKKALELLKTLDISKELDLLTKNRALGPPKHHRMVLDLFEEIRQNLASIIFNYAAQSGLPKDVTLALIQYLKKSKLSGARGEIGDVTTTLMMALFYALDLSIIHRREDGEDVVRRLPIVNDDTFFDDVMQELLINEDAPDVAEKWECPGLRALAIFALGLACGTLKMAPQSLCRSAQQLIEKDEELIDFAIHLKVFDFLNYTFLENTIVFRTEFFYRRLHVLFTDFIEIMHTKVTELRKRADETARTVQNYQQQGLEPPSNVDNNFANLLLAIGKFYENDRLGLQLSLEYWGPMEHSGTYHRTSSRSVCLFKFMRLAGDLLPKTLFIPYLKMLAGLSGNPQAARNAFNLLKQGNGSAGTASVSWDHFFASFARYYQTLKNEQQPGTDTVYRSRLYSRAISPQEIAGLQAVLQVIRVVATHDEVARIALCEQPNYSPIPVMLGLVSCSIVIPLKASLVSALAALGRSSETAIQLWNSLETSQIICTVPSVSNFGNRGIESELEEIEARNETYPLTRAVLDLLYTISSVIIPKNLGAGSRKTGLDPYVVFIIETVFLKFYNRNYKDSQEKWEVAEKCLQICDMFIKIYDISPHDFPNALGHNEENSPPGFHIMLQLHTKSEFLRLVLHLIDEACVMLDSYSPFAGKKQLENTIQYALNIISMGLDKQNIFFEAHFAANSSILMTGCSKLLLEVNPRTGKSDHVLNITKMVIYNSWLPRQALMAVKILHHIILQPNVNSQLLGILTSNERVKLEIRQGFVECLENDVDLDCEPENALALEMEIKEEIINLLNDSLPQSAPNIAHYLLGFDISKDIRLSNLQQPGVLDFPTTCSKSLVNILDQYLEGVKVSASVPEQRLKLIENAYGLVYSLCYNFRTSEVFMRFLRSTGDFLCRHVAELPFSLDSSPHVLNQMTALLKSAAIELKLTAEKNQLSHFSNMCRILGLLSNSNYTDNVQVELGHYQQSLVGMDSMQMSQKKNKASKMLCELLDSLEFELKPLDRPKWDYFDNSLMNNLFANCETVVSSSGIKLIDVKRVHAILREELNSVQATIAAVQPAEASDQRQRQISRGMESGY
| Type | Start | End | Length |
| CDS |
16485 |
16494 |
10 |
| CDS |
16558 |
16709 |
152 |
| CDS |
16771 |
17350 |
580 |
| CDS |
17449 |
18370 |
922 |
| CDS |
18640 |
20663 |
2024 |
| CDS |
20720 |
20784 |
65 |
| intron |
16495 |
16557 |
63 |
| intron |
16710 |
16770 |
61 |
| intron |
17351 |
17448 |
98 |
| intron |
18371 |
18639 |
269 |
| intron |
20664 |
20719 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001845328 |
nuclear pore complex protein Nup205 [Culex quinquefasciatus] gb|EDS40169.1| nuclear pore complex protein Nup205 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR021827 |
Protein of unknown function DUF3414 |
|
| Pfam |
PF11894.3 |
Protein of unknown function (DUF3414) |
0 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL014503 |
| A. aegypti |
AAEL014502 |
| A. gambiae |
AGAP008090 |
| D. melanogaster |
FBgn0031078 |
| P. vanderplanki |
Pv.12621 |
| P. humanus |
PHUM561100-PA |
| N. vitripennis |
NV18986-PA |
| S. invicta |
SI2.2.0_14915 |
| B. mori |
BGIBMGA007622-TA |
| D. plexippus |
DPOGS215310PA |
| T. castaneum |
TC003479 |
| H. sapiens |
ENSP00000285968 |
| C. quinquefasciatus |
CPIJ003755 |
| A. aegypti |
AAEL010526 |
| M. musculus |
ENSMUSG00000038759 |
| H. melpomene |
HMEL008282-PA |
| A. mellifera |
GB18099-PA |