MidgeBase gene description page [Pn.01399]
Outline
| Gene ID | Pn.01399 |
| Type | Protein coding gene |
| Scaffold | PnScaf1346 |
| Start | 10585 |
| End | 12032 |
| Direction | - |
Sequence
Transcript: 954 (bp)
ATGCTAAAATTACTGTGGCTTTCCGCGCTGCTCTCGACCGCCGCTGCGTTTGTGGTCGACGGCGGCATAAACTTCATATTTTTCGGCACGTCCTACACGGACGTCCAGAACACCACGCTCAACAGCGACTTCGCGGCGCTTCGAGGCTCGAGGTTCTACAACGACAGCCGCCCGACCTTCCTGTACGCGCACGGATGGAGGAGCGGCATCTTCCTCGACAGCACCCGGCAAGTCGTCGAAGCCTTTCTTGCGCGCGGCGACCACAACGTCGTCGCCATCGAGTGGAGCAAGTACGCCGTCGTCAACTGCTACTCCGAGGTCGTTGCCTCCCTCAAATACCAAGCAGCGTTCGTAGTCTCGGTGCTGAGGCAGATGCAGGCCAGCGGCATAGACCTGTCGCTGTTTTACTTTGCAGGCCACAGCCTCGGTGCGCAGCTTCTTGGGCGTGTTGGCCACCAGTTTTGGAACGTTCACGGCATGCGACTGACTAGAATAACGGGCTTGGACCCGGCTGGGCCGCAGTTTGCCAACCGTGACTACGAGATTTTCTGGAGCCTCGACTACCCGGCGCTCAACAAGGAAAACGCGCAGTTCGTCGACATCATCCACACGGACGCGAGCCTGCAGGGAATTTCGGTGGCGACGGGGCACGTGGACTTCTGGCCGAATGGCGGGAAGGCGCAGCCGGGCTGCTCCTTCTTCACGTGCATCTTCATCGGCCAAGACGACTGCACCATGTGCAACCACCAGCGGGTGCTGAAGTATTTCGCCGAGTCGGTTCGAACCACTTCGCCGCAGACTTTCTGGTCGATTCGCTGCGCCGACGGCGTTTCTGACTTCAACGCGACCTCCTGCACCGGAGCTGAGCGCGCTTCGATGGGCTTTCATGCCAGCCCGCTTTCGGTGGGTGGAAACTACTTTGTCGAGACCAACAGCCGACCGCCGTACGGCAAG
Protein: 318 (aa)
MLKLLWLSALLSTAAAFVVDGGINFIFFGTSYTDVQNTTLNSDFAALRGSRFYNDSRPTFLYAHGWRSGIFLDSTRQVVEAFLARGDHNVVAIEWSKYAVVNCYSEVVASLKYQAAFVVSVLRQMQASGIDLSLFYFAGHSLGAQLLGRVGHQFWNVHGMRLTRITGLDPAGPQFANRDYEIFWSLDYPALNKENAQFVDIIHTDASLQGISVATGHVDFWPNGGKAQPGCSFFTCIFIGQDDCTMCNHQRVLKYFAESVRTTSPQTFWSIRCADGVSDFNATSCTGAERASMGFHASPLSVGGNYFVETNSRPPYGK
| Type | Start | End | Length |
| CDS |
10588 |
10817 |
230 |
| CDS |
10869 |
11002 |
134 |
| CDS |
11099 |
11349 |
251 |
| CDS |
11468 |
11752 |
285 |
| CDS |
11979 |
12032 |
54 |
| intron |
10818 |
10868 |
51 |
| intron |
11003 |
11098 |
96 |
| intron |
11350 |
11467 |
118 |
| intron |
11753 |
11978 |
226 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFZ21361 |
hypothetical protein SINV_03453 [Solenopsis invicta] |
1e-40 |
| InterPro |
IPR000734 |
Lipase |
|
| InterPro |
IPR013818 |
Lipase, N-terminal |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF12695.2 |
Alpha/beta hydrolase family |
0.0046 |
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
4e-05 |
| Pfam |
PF00151.14 |
Lipase |
2.5e-46 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04999 |
| P. vanderplanki |
Pv.04997 |