MidgeBase gene description page [Pn.01398]
Outline
| Gene ID | Pn.01398 |
| Type | Protein coding gene |
| Scaffold | PnScaf1346 |
| Start | 8598 |
| End | 10173 |
| Direction | + |
Sequence
Transcript: 894 (bp)
ATGGTGTTCTACAGCGCGGGCGTGGGCGACACGAGGTCGCTGACTGCCGACTCGAACTTCCGCGACGTCAACGGCACAAAATTCTTCGACGCGGCACGGCCGACTGCCTTCTACGTGCACGGCTGGCGCAGCGGCCTCCTGCCCATCAGCACCAAGACCGTCGTGAGCGCGTACTTGTCGCGCGGCGACCACAACGTCATCGCCGTCGACTGGAGCGAGCACTCCGCCAACATCGACTACGTCAAGGTCGCTGGTCTCGTCGACGACATCGCAGCAGTCGTCGCGCACATGCTGAAGAAATTGCAGGCAGCCAACGTCGATGTCTCGAAATTTCACTTCATCGGCCACAGCTTGGGCGCGCAAATGCTCGGCGAAGTCGGCAAGCAAATGCTCGCACAAACCGGCTTCAGGCTCAAGAGAATCACCGGCCTCGACCCGGCTGGGCCGCTCTTTGGCAGCAACACCGTTAAATTCTTGGGAATCAGCTTCAGGGTCAAGGAACATCCGACTTTGAGTGCTGGCTGTGCCGAGTTCGTCGACATCATCCACACGGATGCGGGAAACTTCGGCTCGTCTCTGTTCACCGGCCACATCGACTTTTGGCCCAACGGCGGTAACGACCAGCCAGGCTGTGCTTACTTCGTGTGTCTTGTCTTGCGGATGGACGACTGTCTCTCGTGTGACCACGGACGAGCGTGGAAATACTACGCGGAGTCAGTTTTAGCAAAAAAAGCCGACATTTTCGGTGCAATGCGCTGCCAGCAAGGTACCGGCGAGTTCACAAAGTCAAAGTGCATGCAGAACTTGAGAGTCTCGATGGGTTTCTACGCAAAACCGACCAACGCTCGCGGCAACTACTTTGTCGAGACCAACTGGTTGCCTCCCTACAGCAAA
Protein: 298 (aa)
MVFYSAGVGDTRSLTADSNFRDVNGTKFFDAARPTAFYVHGWRSGLLPISTKTVVSAYLSRGDHNVIAVDWSEHSANIDYVKVAGLVDDIAAVVAHMLKKLQAANVDVSKFHFIGHSLGAQMLGEVGKQMLAQTGFRLKRITGLDPAGPLFGSNTVKFLGISFRVKEHPTLSAGCAEFVDIIHTDAGNFGSSLFTGHIDFWPNGGNDQPGCAYFVCLVLRMDDCLSCDHGRAWKYYAESVLAKKADIFGAMRCQQGTGEFTKSKCMQNLRVSMGFYAKPTNARGNYFVETNWLPPYSK
| Type | Start | End | Length |
| CDS |
8598 |
8864 |
267 |
| CDS |
8947 |
9209 |
263 |
| CDS |
9710 |
9843 |
134 |
| CDS |
9941 |
10170 |
230 |
| intron |
8865 |
8946 |
82 |
| intron |
9210 |
9709 |
500 |
| intron |
9844 |
9940 |
97 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFZ21361 |
hypothetical protein SINV_03453 [Solenopsis invicta] |
1e-45 |
| InterPro |
IPR000734 |
Lipase |
|
| InterPro |
IPR013818 |
Lipase, N-terminal |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF05990.7 |
Alpha/beta hydrolase of unknown function (DUF900) |
0.034 |
| Pfam |
PF13341.1 |
RAG2 PHD domain |
0.055 |
| Pfam |
PF12695.2 |
Alpha/beta hydrolase family |
1.5e-05 |
| Pfam |
PF01764.20 |
Lipase (class 3) |
0.053 |
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
1.4e-08 |
| Pfam |
PF00975.15 |
Thioesterase domain |
0.008 |
| Pfam |
PF00151.14 |
Lipase |
9.8e-52 |
| Pfam |
PF10230.4 |
Uncharacterised conserved protein (DUF2305) |
0.017 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes