MidgeBase gene description page [Pn.01397]
Outline
| Gene ID | Pn.01397 |
| Type | Protein coding gene |
| Scaffold | PnScaf1346 |
| Start | 6168 |
| End | 8223 |
| Direction | + |
Sequence
Transcript: 963 (bp)
ATGTTTGTCGTTGAGACTTTGATTTTCTGCTCGTTTTTGGCCAACTCGTTAGATGCCGCTAAAATTCACATAAACGGCATCAACTTCATCTTCATCGGCACGAGCTTCGCGGACAAGCTCAACACCACCCTCGGTTACAACTATGCCAGCGTTTTGGGCACAAAGTACTACAACAACAGCCGGCCAACGTTTCTGTTCGCGCACGGCTGGCGAGACAAACCCGACGCCGACCAGTCGAGGATCCTCGCCGAAGCTTATCTGGCTCGCGGCGGTCACAACTTTGTTGTCATCGACTGGAGCAAATACGCTCTCAACTGGTTCTATCCTGCTGTTGCCGACGCCACAAGGAACTACGCAGCCTTCATCCTCAGAATCCTCGGTCAGCTAAGGACGGCGGGCTTTGATTTGACGAAATTTCACTTTTCGGGCGAAAGCCTCGGCGCTCAGATTGTCGGCCGCGTGGGCCACCAGTATTTAGCCAAATACAAGGAGAAACTGACGAGAATCACGGGCCTCGATCCAGCCGGCCCGCAGTTCGTGAACCGAGACTACGAGGTCTGGTGGAGCTTCTCATACCCGTCGCTGAACAAGCGCAATGCCAAACTCGTCGACATCCTCCACTGCGATGCTGCCGGTGCGGCGATCACGTTCCCTGCCGGTCACATCGACTTTTGGGTTAACGGCGGCTTCTTCCAGCCGGGCTGCAGGAAAAGTGAGTGCAACCTCATCGGAGAAGAGGTGTGCAAGAGCTGCCACCATCGACGCTGCACCAGGTACTACGCGGAGTCCGTCCGACTCGCCACCTCAACCTTCACCGCCACTCGCTGTGCAAACAGTGTCTCTACTTTCAGTGCCAGGACTTGCGTTGGTCGCGAGAGGGCTTCGATGGGCTTTTGGGCCGGCTTTTTCAGTGTCGGCGGCAACTACTTTGTAGCGACCAACGAGAGGACGCCGTACAGCAAG
Protein: 321 (aa)
MFVVETLIFCSFLANSLDAAKIHINGINFIFIGTSFADKLNTTLGYNYASVLGTKYYNNSRPTFLFAHGWRDKPDADQSRILAEAYLARGGHNFVVIDWSKYALNWFYPAVADATRNYAAFILRILGQLRTAGFDLTKFHFSGESLGAQIVGRVGHQYLAKYKEKLTRITGLDPAGPQFVNRDYEVWWSFSYPSLNKRNAKLVDILHCDAAGAAITFPAGHIDFWVNGGFFQPGCRKSECNLIGEEVCKSCHHRRCTRYYAESVRLATSTFTATRCANSVSTFSARTCVGRERASMGFWAGFFSVGGNYFVATNERTPYSK
| Type | Start | End | Length |
| CDS |
6168 |
6227 |
60 |
| CDS |
6490 |
6780 |
291 |
| CDS |
7167 |
7341 |
175 |
| CDS |
7433 |
7508 |
76 |
| CDS |
7567 |
7700 |
134 |
| CDS |
7994 |
8220 |
227 |
| intron |
6228 |
6489 |
262 |
| intron |
6781 |
7166 |
386 |
| intron |
7342 |
7432 |
91 |
| intron |
7509 |
7566 |
58 |
| intron |
7701 |
7993 |
293 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFX89623 |
hypothetical protein DAPPUDRAFT_310411 [Daphnia pulex] |
1e-32 |
| InterPro |
IPR000734 |
Lipase |
|
| InterPro |
IPR013818 |
Lipase, N-terminal |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
1e-06 |
| Pfam |
PF00151.14 |
Lipase |
8.3e-46 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes