MidgeBase gene description page [Pn.01335]
Outline
| Gene ID | Pn.01335 |
| Type | Protein coding gene |
| Scaffold | PnScaf1280 |
| Start | 1378 |
| End | 1873 |
| Direction | + |
Sequence
Transcript: 420 (bp)
ATGTCGCTGATTTACTGCACACGCGAGGCAGTGAAGACAATCCGCAAGAGGAAGACAAACGGTCACGTCATTCACGTGAACAGTGTTGGCGGCCACTCGATGCCCTACCGGCCGACGCTGCCGACCTTTGGCATCTACTACACGAGCAAGCACGCCGTGACGGCACTGGCCGAACAGCACAGACAGGACTTTATGCGCGAGAACCTGGACGTTAAAGTCACGTCGCTGAGCCCGGGCGTGGTGCACACGGAAATTATGACGACCATGGGACCGATCACGATGGAGCAGGTGGACCAGATGATGAAGCTGACGCCGCACATCAAGTCGAAAGACGTCGCCGACGCCGTCATTTACCTTCTCAGCACGCCGTCGAGCGTCTTGGTCACCGAGCTCACCATTCGTCCCATGAACGAACCTTAC
Protein: 140 (aa)
MSLIYCTREAVKTIRKRKTNGHVIHVNSVGGHSMPYRPTLPTFGIYYTSKHAVTALAEQHRQDFMRENLDVKVTSLSPGVVHTEIMTTMGPITMEQVDQMMKLTPHIKSKDVADAVIYLLSTPSSVLVTELTIRPMNEPY
| Type | Start | End | Length |
| CDS |
1378 |
1599 |
222 |
| CDS |
1673 |
1870 |
198 |
| intron |
1600 |
1672 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001867078 |
serine 3-dehydrogenase [Culex quinquefasciatus] gb|EDS44405.1| serine 3-dehydrogenase [Culex quinquefasciatus] |
1e-28 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
0.013 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.0066 |
| Pfam |
PF06560.6 |
Glucose-6-phosphate isomerase (GPI) |
0.011 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes