MidgeBase gene description page [Pn.01327]
Outline
| Gene ID | Pn.01327 |
| Type | Protein coding gene |
| Scaffold | PnScaf1274 |
| Start | 17199 |
| End | 19682 |
| Direction | + |
Sequence
Transcript: 1782 (bp)
ATGTCGAATAATGTAAAGTTTAGTTTCATAGTTTTACTGCTTAAAGTATTTTTCGTGTTTTCACAACAATCGAGCGTAGTAATATCAACAGAGTCAAAAACTCGACAGAAGGATTATGATCGAATACCGAACTATAATCCCAAGTGCGAACCCATACAGATTCCCCTGTGCCAAGACTTGCAGTTCTACAATCAGACCATCTTTCCCAATCTCTTGAATCACGCACGACAGGATGAGGCGGCGCTCGAAGTGCACCAGTTTATTCCACTAATCAAGATCAACTGCTCTCCGGATCTCAAGCTCTTCTTGTGCTCCCTCTACGCTCCACTATGTACAATCCTGGATTACCCGATTCCGCCGTGCCGAAAGCTCTGCGAGAGCGCACGCAACTGTGAGAAAATCATGAGAACGTTTGACTTCCAGTGGCCAGAAAATCTCGAATGCTCCAAATTCCCCGAGGACGGCACCGATATTTGCATATCGCCTAACGTTTCTTCTCCATCGTCGTCGTCTTCATCATCTTCGTCTTCGTCGTCGCCATCGCACGATTCGAACCAATTCAATACGCAAATTACATCACTCGGGAAAGTGGACCGAAAAAATCAACACGATTCGCGAAATGCAACGACCTATGCGCAGCATAAATTCAGAGGGTTCATCTGCCCGGTGCAGCTCAAGGCACCTGCAGCACTCGGCTACGAACTGAACATCGGCGGAAAGGTCGTGAAAGACTGCGGAGCTCCGTGTAGTTCGCTCTTCTTCGACGACAAGGAGGTGACGACTCTGCGGTATTGGATCAGCTTCTGGGCAATTATATGTGTGGCTTGCTGCTTATTTACTATTCTAACTTTCATAATCGATTCGTCACGATTCCGCTACCCGGAGCGTCCGATTGTCTTCATCGCCATTTGCTATCTGATTGTTGCGTCCGCTTACATTTCTGGCCTCGGCGCCGGGAAGAACATTGCTTGCCGCGATCCATTTGTGCACACAGTGAAACTGGGCCGACTCCAAATGATTTCGACCATAACGCAGGGTCATCAAAGCAGTCTCTCTTGCACTGTCCTCTTCCTCATGATGTATTTCTGCCTCATGGCCTCCTTCACCTGGTGGGTGTTTTTCGCTCTGTCCTGGCTCCTCGCTTCGGGCTTCAAGTGGGGTCACGAGGCAATCGAGTCGCGAGCTCATCTCTTCCACCTTATCGGCTGGGCACTGCCCGGCATCCAAACGATCTTCGTGTTGGCTTTGGGCAAAGTGGAGGGCGACATATTGTCAGGTGTTTGCTTCGTTGGAATGCTTTCGCGCCACTCAATCGCAATCTTCCTGCTTATTCCACTGACAATTTACCTGGTGATTGGAACGCTCTTCTTCTCGGTCGGGTTCACCGCCCTCCTCAAGATTCGAACGATGATGAGAAACAAGAACGACGGGACAAGGACTGACAAGTTGGAGAAACTCATGTATCGAATTGTCTTCTTCAGCATTCTGTTTGTCATTCCGTCCTTCATCTACATCGGATGCCTGTTCTACGAGTGGATCTACTTTGACGAGTGGACTCTGCAGTGGAACCGGATGACGTGCAAAAAGTTCGCAATACCGTGCCCGCCGATGGCTTTGGAGGATGAGAATCGTCCAATCTTTAGCATATTCATGCTTAAGTATCTTTGCTCAATGCTCGTGGGAATAACTTCAGGCATCACATGGTTGTGCTCAAGTAAAACATTCGCCAGCTGGAAAACGTTCTTCGACCGCATGAAGGGCCGGAAGGCCAGAAATTATGTG
Protein: 594 (aa)
MSNNVKFSFIVLLLKVFFVFSQQSSVVISTESKTRQKDYDRIPNYNPKCEPIQIPLCQDLQFYNQTIFPNLLNHARQDEAALEVHQFIPLIKINCSPDLKLFLCSLYAPLCTILDYPIPPCRKLCESARNCEKIMRTFDFQWPENLECSKFPEDGTDICISPNVSSPSSSSSSSSSSSSPSHDSNQFNTQITSLGKVDRKNQHDSRNATTYAQHKFRGFICPVQLKAPAALGYELNIGGKVVKDCGAPCSSLFFDDKEVTTLRYWISFWAIICVACCLFTILTFIIDSSRFRYPERPIVFIAICYLIVASAYISGLGAGKNIACRDPFVHTVKLGRLQMISTITQGHQSSLSCTVLFLMMYFCLMASFTWWVFFALSWLLASGFKWGHEAIESRAHLFHLIGWALPGIQTIFVLALGKVEGDILSGVCFVGMLSRHSIAIFLLIPLTIYLVIGTLFFSVGFTALLKIRTMMRNKNDGTRTDKLEKLMYRIVFFSILFVIPSFIYIGCLFYEWIYFDEWTLQWNRMTCKKFAIPCPPMALEDENRPIFSIFMLKYLCSMLVGITSGITWLCSSKTFASWKTFFDRMKGRKARNYV
| Type | Start | End | Length |
| CDS |
17199 |
17429 |
231 |
| CDS |
17566 |
17751 |
186 |
| CDS |
17858 |
18119 |
262 |
| CDS |
18221 |
18381 |
161 |
| CDS |
18498 |
18814 |
317 |
| CDS |
18871 |
18956 |
86 |
| CDS |
19019 |
19256 |
238 |
| CDS |
19319 |
19400 |
82 |
| CDS |
19461 |
19679 |
219 |
| intron |
17430 |
17565 |
136 |
| intron |
17752 |
17857 |
106 |
| intron |
18120 |
18220 |
101 |
| intron |
18382 |
18497 |
116 |
| intron |
18815 |
18870 |
56 |
| intron |
18957 |
19018 |
62 |
| intron |
19257 |
19318 |
62 |
| intron |
19401 |
19460 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002068178 |
GK12696 [Drosophila willistoni] gb|EDW79164.1| GK12696 [Drosophila willistoni] |
0.0 |
| InterPro |
IPR015526 |
Frizzled-related |
|
| InterPro |
IPR020067 |
Frizzled domain |
|
| InterPro |
IPR017981 |
GPCR, family 2-like |
|
| InterPro |
IPR000539 |
Frizzled protein |
|
| Gene Ontology(BP) |
GO:0007166 |
cell surface receptor linked signaling pathway |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004888 |
transmembrane signaling receptor activity |
|
| Pfam |
PF10500.4 |
Nuclear RNA-splicing-associated protein |
0.65 |
| Pfam |
PF01392.17 |
Fz domain |
4.5e-30 |
| Pfam |
PF01534.12 |
Frizzled/Smoothened family membrane region |
8.7e-113 |
| Pfam |
PF13777.1 |
Domain of unknown function (DUF4173) |
0.035 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0016797 |
| M. musculus |
ENSMUSG00000050288 |
| A. mellifera |
GB12765-PA |
| H. sapiens |
ENSP00000287934 |
| D. melanogaster |
FBgn0001085 |
| T. castaneum |
TC014055 |
| D. plexippus |
DPOGS214208PA |
| H. sapiens |
ENSP00000323901 |
| N. vitripennis |
NV18922-PA |
| M. musculus |
ENSMUSG00000045005 |
| N. vitripennis |
NV13851-PA |
| B. mori |
BGIBMGA005935-TA |
| T. castaneum |
TC003407 |
| P. humanus |
PHUM188130-PA |
| P. vanderplanki |
Pv.00504 |
| M. musculus |
ENSMUSG00000041075 |
| A. gambiae |
AGAP011380 |
| H. melpomene |
HMEL006805-PA |
| P. humanus |
PHUM074510-PA |
| S. invicta |
SI2.2.0_09139 |
| H. melpomene |
HMEL010187-PA |
| A. gambiae |
AGAP010442 |
| H. sapiens |
ENSP00000354607 |
| H. sapiens |
ENSP00000363826 |
| C. quinquefasciatus |
CPIJ018048 |
| C. quinquefasciatus |
CPIJ007676 |
| A. aegypti |
AAEL009986 |
| D. plexippus |
DPOGS212368PA |
| B. mori |
BGIBMGA004639-TA |
| M. musculus |
ENSMUSG00000036904 |
| S. invicta |
SI2.2.0_06232 |
| A. aegypti |
AAEL006778 |
| M. musculus |
ENSMUSG00000044674 |
| A. mellifera |
GB18517-PA |
| A. aegypti |
AAEL013160 |
| H. sapiens |
ENSP00000286201 |
| P. vanderplanki |
Pv.00323 |