MidgeBase gene description page [Pn.01277]
Outline
| Gene ID | Pn.01277 |
| Type | Protein coding gene |
| Scaffold | PnScaf1239 |
| Start | 21280 |
| End | 23065 |
| Direction | - |
Sequence
Transcript: 1605 (bp)
ATGAAGTCGCAAAAGATTTTATTTCTCGTCGTTTTTCATATATGTGTCTCGCATTTCAAATCGATGGCCGAAGATCTTTTTCCGGTCAGCATAATTCATCTCAATGATATGCACGCGAGATTCGAAGAGACAAATATTTTGTCAAACACCTGTAAAGACCCGAGTGAGTGCATTGGAGGCTACGCTAGAGTTGTTACGACCGTCAGGAAACTCAAGTCATCGCTGCGAAATCCGATTTACATGAATGTTGCCGACAACTTTCAAGGCAGCTTGTGGTATAACATGTTTCGCTGGAATGTCACGCAACACTTCCTCAACATAGAACCTGCCGACGTTATGACGATTGGCAATCATGAGTTTGATCACGGAATTGATGGATTAGTGCCGTTTCTTGAAAGAATAAGCACACCTGTAGTGAGCTGTAACATCAACGCAACATTGGAACCGGAGTTCGAGAGACTCTTTACGAACTCAATAATCATTGAAAAGGAGGGCAAAGAGATTGGAATTGTGGGAGTCACAACGACTTTCCCCTCAGGCTGGGGTCGTGCGACGGTTCTTCCAGAGGTTGAGAGTGTACGCAAAGAGGTCGACAGTCTGGTCGAAAGAGGAATAAAAATTATCATTGTTCTCTCACATTCGGGTCTCGATGTTGATCGCGAGATTGCAAAACACGGTGGTGCAATCGACATTATTGTCGGAGGTCATTCTCACTCGTTTCTTTATTCTGGAACACCCGTTGGTCCAGACAAACCAGTTAGCGATTATCCTACGGTTGAAAAGCAAGAAGACGGTAGAGAGGTGCTTATTGTGCAGGCATCTGCATACACAAAATATCTCGGCAACATCACCCTCTTTTTTGGTGAGGACGGAGAAATAAAGAGCTACGGAGGTGCACCGATTTTCCTCTCAAACGATATCGAGCAGGATCCTGAAGTCATAAGAGAGCTCGCACCGTGGAAGACAATAATTGATCCGGTTCAATTCAAGCATATTGGCAACATAAAACATCAATTGGATTCGTTCTGCTATCAGAGAGAGTGTGGAATGGGAAATTTGGTGACAGACTCAATGGCCTATGCGTTTATGAACGAAGCAGCGGAAGGTGAGTGGTCTGGGACGACTATCGCCTTTCAAAATCCAGGCGGCGTAAGAGCTGGTCTAGAGAAAGGCGACATCATTTACGCAGATATCATGACAACAACTCCATTTGAGAACAAAATAATTTCCATTGAACTTCCCGGGTCATCGATTCGGGAAGCTCTTGAGTTTGCAGTTTCAAAACTAGAGAGCCTTCAAGTGCTGCAAGTGTCGGGGATAAAGTTGACTTACGATTTAAGTCGTGATGCATATGATCGGGTTGTTGAGCTAAAAGCTTTATGCCAGGCTTGTGATGTGCCCAGGTACGAGGCCATTGATGACACAAAGTTCTACAGAGTTGTTATGCCAAGTTTTTTGGCGGGAGGTGGCGATGGCTTTACAATGATTTCGGAAAACTCACAAAACCCCATCGAAGGACCCGTTGATATTATCGCACTTGAAGAATATATTGAGAAAATTTCACCGATAAACTTACCCCCACTGCTCGGCAGAATATCATTCATT
Protein: 535 (aa)
MKSQKILFLVVFHICVSHFKSMAEDLFPVSIIHLNDMHARFEETNILSNTCKDPSECIGGYARVVTTVRKLKSSLRNPIYMNVADNFQGSLWYNMFRWNVTQHFLNIEPADVMTIGNHEFDHGIDGLVPFLERISTPVVSCNINATLEPEFERLFTNSIIIEKEGKEIGIVGVTTTFPSGWGRATVLPEVESVRKEVDSLVERGIKIIIVLSHSGLDVDREIAKHGGAIDIIVGGHSHSFLYSGTPVGPDKPVSDYPTVEKQEDGREVLIVQASAYTKYLGNITLFFGEDGEIKSYGGAPIFLSNDIEQDPEVIRELAPWKTIIDPVQFKHIGNIKHQLDSFCYQRECGMGNLVTDSMAYAFMNEAAEGEWSGTTIAFQNPGGVRAGLEKGDIIYADIMTTTPFENKIISIELPGSSIREALEFAVSKLESLQVLQVSGIKLTYDLSRDAYDRVVELKALCQACDVPRYEAIDDTKFYRVVMPSFLAGGGDGFTMISENSQNPIEGPVDIIALEEYIEKISPINLPPLLGRISFI
| Type | Start | End | Length |
| CDS |
21283 |
21804 |
522 |
| CDS |
21860 |
22603 |
744 |
| CDS |
22660 |
22723 |
64 |
| CDS |
22791 |
23065 |
275 |
| intron |
21805 |
21859 |
55 |
| intron |
22604 |
22659 |
56 |
| intron |
22724 |
22790 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308620 |
AGAP007140-PA [Anopheles gambiae str. PEST] gb|EAA04249.4| AGAP007140-PA [Anopheles gambiae str. PEST] |
1e-136 |
| InterPro |
IPR004843 |
Metallophosphoesterase domain |
|
| InterPro |
IPR008334 |
5'-Nucleotidase, C-terminal |
|
| InterPro |
IPR006179 |
5'-Nucleotidase/apyrase |
|
| Gene Ontology(BP) |
GO:0009166 |
nucleotide catabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Pfam |
PF13277.1 |
YmdB-like protein |
0.015 |
| Pfam |
PF02872.13 |
5'-nucleotidase, C-terminal domain |
6.2e-37 |
| Pfam |
PF00149.23 |
Calcineurin-like phosphoesterase |
2.4e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10306 |
| Pn.14415 |
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0259101 |
| A. gambiae |
AGAP001601 |
| A. aegypti |
AAEL000575 |
| A. mellifera |
GB12259-PA |
| A. gambiae |
AGAP001600 |
| P. vanderplanki |
Pv.12969 |
| A. aegypti |
AAEL011346 |
| B. mori |
BGIBMGA012871-TA |
| H. melpomene |
HMEL015627-PA |
| D. plexippus |
DPOGS209775PA |
| T. castaneum |
TC000799 |
| A. gambiae |
AGAP007140 |
| D. plexippus |
DPOGS206914PA |
| C. quinquefasciatus |
CPIJ800110 |
| N. vitripennis |
NV10586-PA |
| S. invicta |
SI2.2.0_01916 |
| P. vanderplanki |
Pv.09279 |
| T. castaneum |
TC000800 |
| T. castaneum |
TC000798 |
| D. plexippus |
DPOGS201628PA |
| B. mori |
BGIBMGA010290-TA |
| A. aegypti |
AAEL009970 |
| A. aegypti |
AAEL011341 |
| A. gambiae |
AGAP007139 |
| C. quinquefasciatus |
CPIJ007316 |
| B. mori |
BGIBMGA010291-TA |
| D. plexippus |
DPOGS209774PA |
| C. quinquefasciatus |
CPIJ018313 |
| P. vanderplanki |
Pv.09782 |