MidgeBase gene description page [Pn.01239]
Outline
| Gene ID | Pn.01239 |
| Type | Protein coding gene |
| Scaffold | PnScaf1215 |
| Start | 41223 |
| End | 42476 |
| Direction | + |
Sequence
Transcript: 1182 (bp)
ATGTCCTCATTACCAGAAGTATACATCATTTCTGCAGCAAGAACGCCCATTGGAAGTTTTCAAGGTGCTTTTAACAACTTGCCAGCACATGAATTGGGTGCTGTTGCAATTAAAGAAGTAATTAGACGTGCGAATCTCATTCCTGTAGACGTCAATGAAGTTATTTTAGGTCAAGCATTGCAAGCAGTTACTGGTCAGAATCCGGCCAGACAGGCATCTTTGAAAGCAGGCCTTCCGATTGAGGTACCTGCCTATAGTGTGAATATGCTGTGTGGCTCTGGATTAAAATCAATCGGTCTTGGATTCCAAGCCATTCGATGTGGCGACTCAAGTATCGTAGTTTGTGGCGGACAAGAGAGCATGACAAGAGCTCCACACGCGATTCATATGAGAAGTGGTACAAAAATGGGAGCAGCAACAATGGTCGATACGATGCTTCATGACGGTCTCACCGATGCAATGAACAACATTCATATGGGCGAGACAGCTGAAAATCTTGCAAAAGAGTATTCGGTCTCTCGACAAGAACAAGACGAGTTTGCCACCAAGTCACAGCAACTTGCCACTGCTGCTCAAAAGTTTGGTTGGTTCGATGAAGAAATTGTACCAGTGGTCGTTCCGGGACGAAAGGAGACCGTCACCATCTCAAAGGATGAATATTTAAAGCCAGAAACTACTGTTGAGGGATTGTCAAAATTGCGTGCTTGCTTTATTAAAGAAGGGACAGTCACCGCTGGAAACGCAAGTGGCGTTAATGATTCGGCCGCAGCTGTACTTCTCGCTTCATCAGATGAAGTTGCTCGACGAAACCTCAAGCCTCTGGCAAGAGTTGTTGCCTTTTCTCAGGTTGGATGTGAGCCAAAAACGATGGGAGCAGGACCAATTTTTGCAGTTCCAGAGGTCGTCAAAAAGGCAGGCTGGACACTGGATGATGTCGATTTGTTTGAGTTAAACGAAGCCTTCGCCGCTCAATCGATATCTGTAAATCGGGTATTGAAATTGGACGATACAAAAATTAACATACATGGTGGAGCTATCGCTCTTGGGCATCCGATTGGCGCAAGCGGTGCCCGTGTTCTAGTAACTCTACTGTATGCTTTGAAACGAACAGGAAAAAAGCGTGGAGTTGCAAGTTTATGTGTCGGCGGTGGAATGGGAGTAGCAATTGCAGTGGAAATGGTT
Protein: 394 (aa)
MSSLPEVYIISAARTPIGSFQGAFNNLPAHELGAVAIKEVIRRANLIPVDVNEVILGQALQAVTGQNPARQASLKAGLPIEVPAYSVNMLCGSGLKSIGLGFQAIRCGDSSIVVCGGQESMTRAPHAIHMRSGTKMGAATMVDTMLHDGLTDAMNNIHMGETAENLAKEYSVSRQEQDEFATKSQQLATAAQKFGWFDEEIVPVVVPGRKETVTISKDEYLKPETTVEGLSKLRACFIKEGTVTAGNASGVNDSAAAVLLASSDEVARRNLKPLARVVAFSQVGCEPKTMGAGPIFAVPEVVKKAGWTLDDVDLFELNEAFAAQSISVNRVLKLDDTKINIHGGAIALGHPIGASGARVLVTLLYALKRTGKKRGVASLCVGGGMGVAIAVEMV
| Type | Start | End | Length |
| CDS |
41223 |
41274 |
52 |
| CDS |
41344 |
42473 |
1130 |
| intron |
41275 |
41343 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321828 |
AGAP001318-PA [Anopheles gambiae str. PEST] gb|EAA01190.3| AGAP001318-PA [Anopheles gambiae str. PEST] |
1e-159 |
| InterPro |
IPR002155 |
Thiolase |
|
| InterPro |
IPR020610 |
Thiolase, active site |
|
| InterPro |
IPR020616 |
Thiolase, N-terminal |
|
| InterPro |
IPR020613 |
Thiolase, conserved site |
|
| InterPro |
IPR020617 |
Thiolase, C-terminal |
|
| InterPro |
IPR016038 |
Thiolase-like, subgroup |
|
| InterPro |
IPR016039 |
Thiolase-like |
|
| InterPro |
IPR020615 |
Thiolase, acyl-enzyme intermediate active site |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00109.21 |
Beta-ketoacyl synthase, N-terminal domain |
0.00054 |
| Pfam |
PF00108.18 |
Thiolase, N-terminal domain |
3.9e-103 |
| Pfam |
PF02803.13 |
Thiolase, C-terminal domain |
3.8e-50 |
| Pfam |
PF08541.5 |
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
0.22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM491240-PA |
| A. gambiae |
AGAP001318 |
| C. quinquefasciatus |
CPIJ015227 |
| A. aegypti |
AAEL006912 |
| M. musculus |
ENSMUSG00000062480 |
| T. castaneum |
TC010774 |
| D. melanogaster |
FBgn0035203 |
| M. musculus |
ENSMUSG00000023832 |
| P. vanderplanki |
Pv.07813 |
| H. sapiens |
ENSP00000356015 |
| N. vitripennis |
NV14052-PA |
| H. sapiens |
ENSP00000437850 |
| C. quinquefasciatus |
CPIJ015618 |