MidgeBase gene description page [Pn.01228]
Outline
| Gene ID | Pn.01228 |
| Type | Protein coding gene |
| Scaffold | PnScaf1211 |
| Start | 14585 |
| End | 15141 |
| Direction | - |
Sequence
Transcript: 426 (bp)
ATGATTCGCTTTATCTTGATCCAGAATCGTGCAGGAAAGACGAGATTAGCAAAATGGTACATGCAATTCGATGATGATGAAAAACAGAAATTAATTGAAGAAGTTCATGCTGTTGTCACTGTACGTGATGCGAAACACACCAATTTCGTAGAATTCCGTAACTTCAAAATCGTCTACAGACGATACGCTGGATTGTATTTCTGTATATGCGTCGACGTGAATGATAACAATTTGTGTTATCTGGAGGCAATCCACAACTTTGTGGAAGTGCTGAACGAATATTTCCACAATGTATGCGAACTGGATTTAGTTTTCAACTTTTATAAGGTCTACACAGTCGTGGATGAGATGTTTTTGGCAGGTGAAATTCGTGAGACCTCTCAAACGAAGGTCCTCAAGCAGCTGCTAACGCTCAATTCGTTGGAC
Protein: 142 (aa)
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLTLNSLD
| Type | Start | End | Length |
| CDS |
14588 |
14860 |
273 |
| CDS |
14923 |
15072 |
150 |
| CDS |
15139 |
15141 |
3 |
| intron |
14861 |
14922 |
62 |
| intron |
15073 |
15138 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648627 |
clathrin coat assembly protein ap17 [Aedes aegypti] ref|XP_001648628.1| clathrin coat assembly protein ap17 [Aedes aegypti] ref|XP_321389.2| AGAP001703-PA [Anopheles gambiae str. PEST] ref|XP_001851131.1| clathrin coat assembly protein AP17 [Culex quinquefasciatus] gb|ABF18119.1| clathrin adaptor complex small subunit [Aedes aegypti] gb|EAT33340.1| clathrin coat assembly protein ap17 [Aedes aegypti] gb|EAT33341.1| clathrin coat assembly protein ap17 [Aedes aegypti] gb|EAA01622.2| AGAP001703-PA [Anopheles gambiae str. PEST] gb|EDS33084.1| clathrin coat assembly protein AP17 [Culex quinquefasciatus] gb|ADD20477.1| clathrin adaptor complex small subunit [Glossina morsitans morsitans] gb|EFR20072.1| hypothetical protein AND_30500 [Anopheles darlingi] |
1e-75 |
| InterPro |
IPR016635 |
Adaptor protein complex, sigma subunit |
|
| InterPro |
IPR000804 |
Clathrin adaptor complex, small chain |
|
| InterPro |
IPR022775 |
AP complex, mu/sigma subunit |
|
| InterPro |
IPR011012 |
Longin-like domain |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0030117 |
membrane coat |
|
| Gene Ontology(MF) |
GO:0008565 |
protein transporter activity |
|
| Pfam |
PF06849.7 |
Protein of unknown function (DUF1246) |
0.091 |
| Pfam |
PF01217.15 |
Clathrin adaptor complex small chain |
2.6e-62 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0043012 |
| A. aegypti |
AAEL014375 |
| H. melpomene |
HMEL010117-PA |
| P. vanderplanki |
Pv.04489 |
| A. gambiae |
AGAP001703 |
| H. sapiens |
ENSP00000263270 |
| C. quinquefasciatus |
CPIJ009504 |
| D. plexippus |
DPOGS212856PA |
| B. mori |
BGIBMGA000800-TA |
| M. musculus |
ENSMUSG00000008036 |
| T. castaneum |
TC009991 |
| P. humanus |
PHUM515120-PA |
| N. vitripennis |
NV11292-PA |