MidgeBase gene description page [Pn.01222]
Outline
| Gene ID | Pn.01222 |
| Type | Protein coding gene |
| Scaffold | PnScaf1207 |
| Start | 51 |
| End | 3339 |
| Direction | - |
Sequence
Transcript: 2778 (bp)
ATGAAAGTGGACACGAGCCGCTTAAAAAAGGGAACCTCAGAAGTACCGCCCGAGTGTCAAAATCTCATAGATAAGCTCAAGCTCTGCAATCGCAATGAGTTGATAGAGGAATTAGCAAAAATCGAGACATGGACCTTCGGAAAATGTGAACTTTTCCATTGGATCGAAATCCTAGACATTTTTGATGAAATACTAGAAGAAGCAACGCATTATGAAGAACATCCGATTTACATAACGTGTGATACCCCTCAGTTTGAGAAGGGACGAAAGCTGCTTCTTCTTGTTCTCAATTTCACAACGCTTCTCATCGAGCACAGTTTCTCGAGACATTTATACAACTCTGTTGAGCATCTGACTCAGCTCCTACTCTCGACCGATCTGGAAATTATTCTCGGCGTTCTTAATCTCTTGTACATGTTCTCGAAGCGCAGTAACTTCATATCGCGACTAAGTAATCATAAGAAGACCACGCTGCTAAGCCGCTTGCGACACATTGCCGAGCCTTATGGAGGAAAAGAGTGTGGTTTTGGCCTAGCCGACTGCTGCCGTCCCGAGCAAAAGATGCCAAAGGCAGTCTATCACTTTTACTATGAGTACTACACAAAAACGGGTGCACTTCAAGTCATCGACCATCAGAACATTTCAAAGCACGATCCGAAAAGTATTACGGTAAAATTGTGGAAAGACCTGGATCAATACCTGGACGACGACCAGAAATATCATCTGTTTGCACGAGCGCGTCTTGCGACTGGTTTCTGGAACTACGAAAATCGCATTTTGTTCGTACAAGCGCGTCTCCAAGCACTGTCGATTCTCGTCTACTCGGATGCTCTGCTCGGGTTCTCGCACACTCTCATCTATCCAGGGTTCCTCGAAGAGCTCGTAGAACTTTTGGAGTTGCAACAGCCGAATCTAGTGGAAATTCGTGCGGCAGCACTAAGAACGCTAACCGCAATAATTCACTTGGAAAGGAATTCACAATATCAACGTAAGTCCGAAACTCGTCTCAACACGATAATTGAAGTAACCGGAGCAGCATCGTATCACGGTTTTCTGCCGATTCTCGTCCGCAACTGCATCGCCAATCTAACTCGATCAAACAAATCAACACCAACGACTCCGCTATTTAAAAACAATGAACAGCAACTGACTGATGACAACAATCTGTTCCCTCTGCAGCTCGCCACTGCATTGTTCAGCTTTCTATACCACCTGGCTAGCTACGAACCTGGCGCAGAATCTCTCGTCTCGTGCGGCATGATGGAGTGCTTACTGCGAGTCATCAACTGGTCGGGAAGCGAGCTGGAACATATTACATTTGTAACGCGTGCTGTGAGAGTAATAGACTTGATTACCAATTTAGATATGCAATCATTTCAAACCAACTACGGACTCAATACGTTTATTAAGCGCCTATACATTGAGGTGAACTTGTGCAGAAAGGAGCAGTCGTATGAGATTAAGCCAAACATTGAAAATCCAGCCGAGCACGACAAGAACATTTCTCACATTGATGAGGCGATGGACACTGGAAGCCAGTACGGAGACGATGACATTTGCATGTCTGCTTCGACTAGCAACATCATGACAGCGTCCACGCAATCGACCTCGGCCGATGCTATTTCTGCTGCCACTTCAACGAGCAAGTTAGAGATGAATGCAGCCAACCGTACTTGCCTGCCACAGCGTGCGGCGCTCTTGAAATCGATGCTGAATTTCCTGAAGAAAGCCATCCAAGACGTTGCATTTACCGACTCCATTCGTCACATCATGGAGGGAACATTGCCCGAGTCTCTGAAACACATCATCAGCAACTCTGAGTATTACGGACCGTCACTTTTCCTGCTTGCAACAGACGTCGTGACCGTTTACGTTTTCCAAGAGCCCTCGCTGCTCTCGTCGTTGCAAGACAACGGCCTAACCGATGTGGTTCTTCAGGCTCTTCTCAAAAAGGATGTTCCGGCGACGCGCGAAGTTCTCGGATCTCTGCCGAACGTATTCAGTGCTTTGTGCTTGAACACGCGCGGAATGGAGAGTTTCATGAAGTACAATCCGTTCGATAAGCTCTTTCGCGTTTTCATCTCGCCGGTCTATTTGTCAGCAATGAGACGGCGACGCAGCTCAGATCCGATGGGAGACACCGCGTCGAATATCGGGAATACAATGGACGAGCTCATGAGAAATCAGCCGAGCTTGAAGACACCCGCAATTAAAGCAATTATAAAGCTGCTCGAGGAGATTGTCGAACTTGGAACCGATCCAAAATATGTGTGCTGGCGTGCGCAAAACAAGAACGATGTCTCGCCGCAAATGCCGAACTCGAGGCAAAATAACAACAATCACAACAATGGCGGTAGTTCGGACGAGGACGACGACGATGAGGAAGAAGTTTCAACCTCGTCGCACAACCAAGCTCAGGGACAAAATTCAGCTGCGCCCGGCAACGAAAACGCTAGCGGAAGCTCATCGTCTCAACAGCAGCAGCAAGAACAACAGCCTGGAACGCCGCAAGCATTCTCGTCGCAGGCCTCATCGCCCACTGAACGCATTCCAATTGCACTGATTGACTACACGCTAAACACGATGAAATTCCTTGAGGCTATTTTAAGCAACAACTCGACTGATGATCATTGTCGTGAATTTGTGGCACTCGGTGGCCTTAAGCCTCTACTGTCGATCCTGTCCTTGCCGAATTTGCCAGTGTCAAGCTACAACTCGCCCATCACTGCGACAGCACAAGCAGTTGCCTCCGTCTGCAAGTCCATTCTGTGGACAAAG
Protein: 926 (aa)
MKVDTSRLKKGTSEVPPECQNLIDKLKLCNRNELIEELAKIETWTFGKCELFHWIEILDIFDEILEEATHYEEHPIYITCDTPQFEKGRKLLLLVLNFTTLLIEHSFSRHLYNSVEHLTQLLLSTDLEIILGVLNLLYMFSKRSNFISRLSNHKKTTLLSRLRHIAEPYGGKECGFGLADCCRPEQKMPKAVYHFYYEYYTKTGALQVIDHQNISKHDPKSITVKLWKDLDQYLDDDQKYHLFARARLATGFWNYENRILFVQARLQALSILVYSDALLGFSHTLIYPGFLEELVELLELQQPNLVEIRAAALRTLTAIIHLERNSQYQRKSETRLNTIIEVTGAASYHGFLPILVRNCIANLTRSNKSTPTTPLFKNNEQQLTDDNNLFPLQLATALFSFLYHLASYEPGAESLVSCGMMECLLRVINWSGSELEHITFVTRAVRVIDLITNLDMQSFQTNYGLNTFIKRLYIEVNLCRKEQSYEIKPNIENPAEHDKNISHIDEAMDTGSQYGDDDICMSASTSNIMTASTQSTSADAISAATSTSKLEMNAANRTCLPQRAALLKSMLNFLKKAIQDVAFTDSIRHIMEGTLPESLKHIISNSEYYGPSLFLLATDVVTVYVFQEPSLLSSLQDNGLTDVVLQALLKKDVPATREVLGSLPNVFSALCLNTRGMESFMKYNPFDKLFRVFISPVYLSAMRRRRSSDPMGDTASNIGNTMDELMRNQPSLKTPAIKAIIKLLEEIVELGTDPKYVCWRAQNKNDVSPQMPNSRQNNNNHNNGGSSDEDDDDEEEVSTSSHNQAQGQNSAAPGNENASGSSSSQQQQQEQQPGTPQAFSSQASSPTERIPIALIDYTLNTMKFLEAILSNNSTDDHCREFVALGGLKPLLSILSLPNLPVSSYNSPITATAQAVASVCKSILWTK
| Type | Start | End | Length |
| CDS |
54 |
62 |
9 |
| CDS |
391 |
2170 |
1780 |
| CDS |
2286 |
3013 |
728 |
| CDS |
3079 |
3339 |
261 |
| intron |
63 |
390 |
328 |
| intron |
2171 |
2285 |
115 |
| intron |
3014 |
3078 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFN65870 |
E3 ubiquitin-protein ligase HUWE1 [Camponotus floridanus] |
0.0 |
| InterPro |
IPR010314 |
E3 ubiquitin ligase, domain of unknown function DUF913 |
|
| InterPro |
IPR010309 |
E3 ubiquitin ligase, domain of unknown function DUF908 |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF06012.7 |
Domain of Unknown Function (DUF908) |
3.1e-49 |
| Pfam |
PF04147.7 |
Nop14-like family |
4.9 |
| Pfam |
PF06025.7 |
Domain of Unknown Function (DUF913) |
4.3e-82 |
| Pfam |
PF04205.9 |
FMN-binding domain |
0.085 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.03360 |
| Pn.13131 |
| Pn.02608 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000401253 |
| P. vanderplanki |
Pv.08798 |
| A. mellifera |
GB18736-PA |
| A. mellifera |
GB12051-PA |
| M. musculus |
ENSMUSG00000025261 |
| H. sapiens |
ENSP00000340648 |
| S. invicta |
SI2.2.0_04457 |
| T. castaneum |
TC004152 |
| P. humanus |
PHUM461390-PA |
| H. sapiens |
ENSP00000218328 |
| D. melanogaster |
FBgn0030674 |
| H. sapiens |
ENSP00000262854 |
| H. sapiens |
ENSP00000403236 |
| A. mellifera |
GB18867-PA |