MidgeBase gene description page [Pn.01191]
Outline
| Gene ID | Pn.01191 |
| Type | Protein coding gene |
| Scaffold | PnScaf1163 |
| Start | 27484 |
| End | 28322 |
| Direction | + |
Sequence
Transcript: 399 (bp)
ATGTCTCTTCCATTCAACAAGAAGTATAAGCTCGATCGCTCCGAGAATTTCGACGAGTTTCTGAAGGAGCTGGGTGTCGGCTACTTGATTAGAAAGATGGCTAACAACACGACCTCGACCGTAGAATTGATCAAGCTCGGCGACGACTCCTACAGTTTCAACACCACCTCCACATTCCGCTCTCAGGAGCTGAAATTCAAGCTTGACGAGGAGTTCACCGAGAAGAGAATGGACGGAGCTGAAGTGAAGACCGTCATCACCTTCGAGGGAAACAAAATGATTCAGAGACAGAAGGGCGATAAGGAAATCGTGCTCGAGCGCGAGTTCACCGACACAGAGTTGTTCCTCACTTGCACGGTCGGCGACGTTGTCGCAAAGCGCTGGTTCAAGGCAATCGAC
Protein: 133 (aa)
MSLPFNKKYKLDRSENFDEFLKELGVGYLIRKMANNTTSTVELIKLGDDSYSFNTTSTFRSQELKFKLDEEFTEKRMDGAEVKTVITFEGNKMIQRQKGDKEIVLEREFTDTELFLTCTVGDVVAKRWFKAID
| Type | Start | End | Length |
| CDS |
27484 |
27556 |
73 |
| CDS |
27994 |
28319 |
326 |
| intron |
27557 |
27993 |
437 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001980550 |
GG17215 [Drosophila erecta] gb|EDV49508.1| GG17215 [Drosophila erecta] |
2e-30 |
| InterPro |
IPR000463 |
Cytosolic fatty-acid binding |
|
| InterPro |
IPR012674 |
Calycin |
|
| InterPro |
IPR000566 |
Lipocalin/cytosolic fatty-acid binding protein domain |
|
| InterPro |
IPR011038 |
Calycin-like |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(MF) |
GO:0008289 |
lipid binding |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00061.18 |
Lipocalin / cytosolic fatty-acid binding protein family |
1.2e-14 |
| Pfam |
PF05431.6 |
Insecticidal Crystal Toxin, P42 |
0.078 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.08774 |
| Pn.06688 |
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013400 |
| H. sapiens |
ENSP00000362817 |
| H. sapiens |
ENSP00000357429 |
| T. castaneum |
TC015275 |
| P. vanderplanki |
Pv.06182 |
| C. quinquefasciatus |
CPIJ018993 |
| P. vanderplanki |
Pv.15108 |
| A. gambiae |
AGAP013189 |
| D. plexippus |
DPOGS206997PA |
| P. humanus |
PHUM500900-PA |
| P. vanderplanki |
Pv.11935 |
| A. aegypti |
AAEL005997 |
| B. mori |
BGIBMGA013111-TA |
| M. musculus |
ENSMUSG00000019874 |
| P. humanus |
PHUM587770-PA |
| C. quinquefasciatus |
CPIJ013698 |
| H. sapiens |
ENSP00000348931 |
| N. vitripennis |
NV13715-PB |
| M. musculus |
ENSMUSG00000056366 |
| H. melpomene |
HMEL002112-PA |
| N. vitripennis |
NV13715-PA |
| H. sapiens |
ENSP00000256103 |
| M. musculus |
ENSMUSG00000052468 |
| D. melanogaster |
FBgn0037913 |
| P. vanderplanki |
Pv.00684 |
| M. musculus |
ENSMUSG00000028773 |
| A. mellifera |
GB15299-PA |
| P. humanus |
PHUM240020-PA |