MidgeBase gene description page [Pn.01180]
Outline
| Gene ID | Pn.01180 |
| Type | Protein coding gene |
| Scaffold | PnScaf1158 |
| Start | 2789 |
| End | 5056 |
| Direction | + |
Sequence
Transcript: 1368 (bp)
ATGCGAATTTGGGTCGCGTTTTGCTTGGTTTTGTTGGCTTTGGTGCAGATAAAAGTGGGGAGCGGCTATGAAATTGTGCAAGTCGCTTCGGTGAAGGGCTTTAGGCGGGGCGAGTGCCGGGAGTGGCAGAGGTTTAAGAAAAAGTACAACAAAGTCTACGAGTCGAAGCGCGAAAACATTCGCCGGCGCCAAATCTTCATCGCCAACCTGCGCACCATTCGAGCGCACAACCAGAGATTCCTCGCCGGTTCCGAGGCCTACAACTGCTCCATCAACAGACACAGCGACCTCACGTCCGCCGAGTTTTCCGCTCGGTTTTTGGGCCTCAACGGACGTCTCATCGGCGGCCTCAACGCCGAGCGCAGCTTCGTCGACATGAAGGGCAGGAAGGTGTTTCGGGCGGTCAAGTACGACCGGGTCGCGAACTTTGTCGACTGGAGGCGGACGGCAGTTAGTCCCGTGAAAAGGCAGGGCTTTTGCGGCAGCTGCTGGGCGTTCTCGGCTGCTGGCGCGCTCGAGGGTCAAATTTACATCAAAACTCAAAAGCTGATCAACGTTTCGGCGCAGTACTTTGTTGACTGCGTGAGGACTGAGATGTCTGAGGGGTGCATCGGCGGCTCGATGGACGACGCATTTCAGTACTCGGCCGCCAACGGGATCGTCCTCGACAGCTTGTACCCGTACGAGGAGTCGGAATCGTGGCTGGGCTGCCAGAGCAGCAAGGAGAAGCTCAAAGGGGTGAAAATCAAGGGATTCGTTCAGCTGGCGAAGCAAACCGAGGAGGAGCTGAAGGCGGCCGTGTCGAATGTCGGCCCCATAAGCGTCGGCATCGACGCCAGCCTCAGGTCCATGCAGTTCTACGACTACGGCGTGTACTTCGACAAGAGCTGCAACGCCAGCAACATCAACCATGGCGTGCTGGTTGTTGGGTACGGAAGCGACACGTCCTTCGATCCACCGCAAGACTACTGGATCGTCAAAAATTCTTGGGGGTCGACACACGGCGAGCACGGATATATCAGAATAGCGCGAAACCGCGACAACCACTGCGGAATTGCGACGATGGCCAGCTATCCTTTGGTTTTTTGCCTGAAAATTAATAAATTTTGTTGTTACTACGTTTTTATTAACTCAATTTCTTGTTTGTCTGTTTGTCCGTTTGTCTGTCTGTCTGTTTGTCTGTCTGTCTATCTATTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATTTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCAGTCTGATTGTCTGTCTGTTTTTCTGTCTGTCTGTCTGTCTGTCTGTCTATTTGTCTATCTGTCTAGCTGTCTATAAGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTC
Protein: 456 (aa)
MRIWVAFCLVLLALVQIKVGSGYEIVQVASVKGFRRGECREWQRFKKKYNKVYESKRENIRRRQIFIANLRTIRAHNQRFLAGSEAYNCSINRHSDLTSAEFSARFLGLNGRLIGGLNAERSFVDMKGRKVFRAVKYDRVANFVDWRRTAVSPVKRQGFCGSCWAFSAAGALEGQIYIKTQKLINVSAQYFVDCVRTEMSEGCIGGSMDDAFQYSAANGIVLDSLYPYEESESWLGCQSSKEKLKGVKIKGFVQLAKQTEEELKAAVSNVGPISVGIDASLRSMQFYDYGVYFDKSCNASNINHGVLVVGYGSDTSFDPPQDYWIVKNSWGSTHGEHGYIRIARNRDNHCGIATMASYPLVFCLKINKFCCYYVFINSISCLSVCPFVCLSVCLSVYLFVCLSVCLSVYLSICLSVCLSVSLIVCLFFCLSVCLSVYLSICLAVYKSVCLSVCLSV
| Type | Start | End | Length |
| CDS |
2789 |
2926 |
138 |
| CDS |
3298 |
3764 |
467 |
| CDS |
4020 |
4336 |
317 |
| CDS |
4398 |
4446 |
49 |
| CDS |
4538 |
4542 |
5 |
| CDS |
4609 |
4714 |
106 |
| CDS |
4768 |
5053 |
286 |
| intron |
2927 |
3297 |
371 |
| intron |
3765 |
4019 |
255 |
| intron |
4337 |
4397 |
61 |
| intron |
4447 |
4537 |
91 |
| intron |
4543 |
4608 |
66 |
| intron |
4715 |
4767 |
53 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001655999 |
cathepsin l [Aedes aegypti] gb|EAT45919.1| cathepsin l [Aedes aegypti] |
2e-73 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| InterPro |
IPR000169 |
Cysteine peptidase, cysteine active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.00044 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
4e-12 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
6.6e-72 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes