MidgeBase gene description page [Pn.01173]
Outline
| Gene ID | Pn.01173 |
| Type | Protein coding gene |
| Scaffold | PnScaf1143 |
| Start | 3706 |
| End | 8083 |
| Direction | + |
Sequence
Transcript: 1797 (bp)
ATGCTAAGACTACCGTTGAAGGCTTTGCTAGTATTGTTAGTTAATTTAGCTTTAGTTAGTGCTCTCCTGGTGAATCGCTTTGACAGCGAACTTCCCAAACTTCCGCCACCGTGCAGTAGCGAAATCTACTGCCATGGCCGACTCCTGCACACCGTCCAGATGGCGCGTCTCTTCAACGACTCGAAGACGTTCGTCGACATGAAACTCCGGCATCCGCCGAGCGAGACGCTCAAACTCTTCGACGAGTTCATGGCTGCCTATCCGGACGGCGAGCCCGACCGCGAGAAGCTCCGCGAATGGGTCAACAAGACCTTCGAGGAGCCGGGCAAGGAGTTCGAGCCCTGGACGCCCGACGACTTCGTGAAGCAGCCCAAGCTCCTCGACCGCATCACGGACCACAGCCTGCGTGGCTTCGCCAGCGATCTCAACGGCATCTGGTGGGAGCTCGGTCGGAAAATGAAGGCCGACGTGAAAAACAACAGCGACCTTTACTCGATCGTTTACGTTGAGAATCCGGTGATTGTGCCGGGCGGAAGGTTCCGAGAATTTTACTACTGGGACTCGTACTGGGTCGTGCGGGGCTTGCTACTCAGCGAAATGTTTCATACCACAAAGGGAATGCTCGAGAACTTCCTGTCAATTGTCCAGCGCTTCGGCTTCATACCGAATGGCGGCAGAGTGTACTACTCGATGCGCTCCCAACCCCCGCTTCTCGCGCCCATGATCAAGACCTACGTCGACACAACAAAGGACATCGACTTCGCCGTCCAAGCCGTCGACATTCTCGCGCTGGAGTTCGAGTTCTGGATGAAGAACCACACGGTGCAGCTGAAGGGCCACACGCTCGCCAGGTACGGCGATAAGTCGAGTGGTCCGCGACCCGAGAGCTACAGAGAGGACATCGAGACGGGCGAGGCTTTCAGCACCGAGGAGGAGAAGGAAGAGCACTACTCGGAGCTGAAGGCAGCTGCCGAAAGCGGCATGGACTTCTCCTCGCGGTGGTTCATCAACGCCGATGGCGAAAACATCGGCACGCTAGCCAACCTCAAGACGCGCTACATCATACCCGTCGAGCTGAACGCCATTCTCTACTGGAATGCCATCATAATCTCTGAGTTCTACAACTACGCCGGCAACGCCACGAAGAGCGCGGAATTTCTGGAAACGGCGCAGAAATTCAAAGATGCAGTCAACGAGGTCCTTTGGGACGAGGCCACAGGCGCCTGGCTCGACTACGACCTCATCAACGACAAGCACCGTCCCTACTTCACGCCCACCAACCTGTCGCCCCTCTGGATGCGCTGCTACGACCCCACCAAGCGCGAGCAAATCGCCGAAAGGGTCATGCAGTACATCGACGCCGTTCGTCTCGACGACTACCCCGGCGGCGTGCCAACCACTCTCGTCAACAGCGGCGAGCAGTGGGACTGGCCGAATGTGTGGGCGCCCATGCAGCACATGCTCATCGTAGGCCTCGATAACCTCGGCGATAAGGCAGCCAAGGACAAGGCACAGGACTACGCGCAGCGGTGGGTGTTGGGCAACTACTTGGCATACAAGGAGACGGGCGCCATGTTTGAGAAGTACCTCGCAACAGAGCTCGGAGGTCATGGTGGCGGCGGCGAGTATGAGGTACAGAAGGGCTTTGGCTGGTCCAACGGTGCCATTCTCGATCTCCTCGATCGCTACGGAAGCGTGCTGAGTTCCTCAGTCAAACCGTCAATAATGGGCAAGCTGTTTACAGGAATATTCGCCATAGCTACTATGATGGTGTCTAGAGTACGGTGATGTGCTGCG
Protein: 599 (aa)
MLRLPLKALLVLLVNLALVSALLVNRFDSELPKLPPPCSSEIYCHGRLLHTVQMARLFNDSKTFVDMKLRHPPSETLKLFDEFMAAYPDGEPDREKLREWVNKTFEEPGKEFEPWTPDDFVKQPKLLDRITDHSLRGFASDLNGIWWELGRKMKADVKNNSDLYSIVYVENPVIVPGGRFREFYYWDSYWVVRGLLLSEMFHTTKGMLENFLSIVQRFGFIPNGGRVYYSMRSQPPLLAPMIKTYVDTTKDIDFAVQAVDILALEFEFWMKNHTVQLKGHTLARYGDKSSGPRPESYREDIETGEAFSTEEEKEEHYSELKAAAESGMDFSSRWFINADGENIGTLANLKTRYIIPVELNAILYWNAIIISEFYNYAGNATKSAEFLETAQKFKDAVNEVLWDEATGAWLDYDLINDKHRPYFTPTNLSPLWMRCYDPTKREQIAERVMQYIDAVRLDDYPGGVPTTLVNSGEQWDWPNVWAPMQHMLIVGLDNLGDKAAKDKAQDYAQRWVLGNYLAYKETGAMFEKYLATELGGHGGGGEYEVQKGFGWSNGAILDLLDRYGSVLSSSVKPSIMGKLFTGIFAIATMMVSRVRXCAA
| Type | Start | End | Length |
| CDS |
3706 |
3824 |
119 |
| CDS |
3944 |
4430 |
487 |
| CDS |
5017 |
5595 |
579 |
| CDS |
5662 |
6060 |
399 |
| CDS |
6416 |
6542 |
127 |
| CDS |
7924 |
7999 |
76 |
| CDS |
8071 |
8080 |
10 |
| intron |
3825 |
3943 |
119 |
| intron |
4431 |
5016 |
586 |
| intron |
5596 |
5661 |
66 |
| intron |
6061 |
6415 |
355 |
| intron |
6543 |
7923 |
1381 |
| intron |
8000 |
8070 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAH28889 |
trehalase [Polypedilum vanderplanki] |
0.0 |
| InterPro |
IPR001661 |
Glycoside hydrolase, family 37 |
|
| InterPro |
IPR008928 |
Six-hairpin glycosidase-like |
|
| InterPro |
IPR018232 |
Glycoside hydrolase, family 37, conserved site |
|
| Gene Ontology(BP) |
GO:0005991 |
trehalose metabolic process |
|
| Gene Ontology(MF) |
GO:0004555 |
alpha,alpha-trehalase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF06202.9 |
Amylo-alpha-1,6-glucosidase |
2.2e-05 |
| Pfam |
PF01204.13 |
Trehalase |
1.4e-175 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV13882-PA |
| D. melanogaster |
FBgn0034121 |
| A. mellifera |
GB14803-PA |
| H. sapiens |
ENSP00000432853 |
| N. vitripennis |
NV50018-PA |
| T. castaneum |
TC006698 |
| T. castaneum |
TC006700 |
| D. melanogaster |
FBgn0003748 |
| S. invicta |
SI2.2.0_13778 |
| H. sapiens |
ENSP00000264029 |
| H. melpomene |
HMEL000006-PA |
| T. castaneum |
TC004791 |
| D. plexippus |
DPOGS213645PA |
| H. melpomene |
HMEL000004-PA |
| H. sapiens |
ENSP00000398042 |
| D. plexippus |
DPOGS215037PA |
| P. humanus |
PHUM267740-PA |
| D. plexippus |
DPOGS215036PA |
| P. humanus |
PHUM617010-PA |
| M. musculus |
ENSMUSG00000032098 |
| H. sapiens |
ENSP00000432640 |
| H. sapiens |
ENSP00000381020 |
| A. aegypti |
AAEL009658 |
| C. quinquefasciatus |
CPIJ017949 |
| A. mellifera |
GB16316-PA |
| P. vanderplanki |
Pv.10692 |
| S. invicta |
SI2.2.0_09948 |
| C. quinquefasciatus |
CPIJ006199 |
| B. mori |
BGIBMGA005664-TA |
| T. castaneum |
TC006699 |
| A. gambiae |
AGAP012053 |
| B. mori |
BGIBMGA005665-TA |
| B. mori |
BGIBMGA004586-TA |
| T. castaneum |
TC006697 |
| H. sapiens |
ENSP00000435095 |