MidgeBase gene description page [Pn.01170]
Outline
| Gene ID | Pn.01170 |
| Type | Protein coding gene |
| Scaffold | PnScaf1142 |
| Start | 57474 |
| End | 58392 |
| Direction | - |
Sequence
Transcript: 378 (bp)
ATGGCAGGAGGAAAAGCTGGTAAGGACTCAGGAAAGGCAAAGGCGAAGGCCGTATCACGTTCAGCTCGTGCTGGTCTTCAGTTCCCTGTCGGCCGTATTCACAGACATTTAAAGAACCGCACAACGAGCCATGGACGTGTTGGAGCTACCGCAGCCGTCTACTCTGCCGCTATCCTGGAATATTTGACCGCTGAAGTTCTCGAGTTGGCTGGTAATGCTTCAAAGGATTTAAAAGTCAAACGTATCACCCCCCGTCACTTGCAACTGGCCATTCGTGGAGACGAGGAACTCGATTCATTGATTAAAGCAACTATTGCCGGCGGTGGTGTCATCCCGCACATCCACAAGTCACTCATCGGCAAGAAGGGAGGTCCTGAA
Protein: 126 (aa)
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGGPE
| Type | Start | End | Length |
| CDS |
57477 |
57659 |
183 |
| CDS |
57913 |
58026 |
114 |
| CDS |
58132 |
58209 |
78 |
| CDS |
58390 |
58392 |
3 |
| intron |
57660 |
57912 |
253 |
| intron |
58027 |
58131 |
105 |
| intron |
58210 |
58389 |
180 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310818 |
AGAP000306-PA [Anopheles gambiae str. PEST] ref|XP_001850140.1| histone h2a [Culex quinquefasciatus] gb|EAA06529.3| AGAP000306-PA [Anopheles gambiae str. PEST] gb|EDS31487.1| histone h2a [Culex quinquefasciatus] |
4e-64 |
| InterPro |
IPR002119 |
Histone H2A |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| InterPro |
IPR007125 |
Histone core |
|
| Gene Ontology(BP) |
GO:0006334 |
nucleosome assembly |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0000786 |
nucleosome |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
2.7e-22 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
0.0078 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000296417 |
| M. musculus |
ENSMUSG00000037894 |
| D. melanogaster |
FBgn0001197 |
| A. gambiae |
AGAP000306 |
| A. aegypti |
AAEL007609 |
| C. quinquefasciatus |
CPIJ008494 |
| N. vitripennis |
NV16472-PA |
| B. mori |
BGIBMGA013449-TA |
| T. castaneum |
TC000931 |
| P. humanus |
PHUM368550-PA |
| D. plexippus |
DPOGS210556PA |
| P. vanderplanki |
Pv.01899 |
| A. mellifera |
GB12991-PA |
| H. melpomene |
HMEL009545-PA |
| H. sapiens |
ENSP00000308405 |