MidgeBase gene description page [Pn.01164]
Outline
| Gene ID | Pn.01164 |
| Type | Protein coding gene |
| Scaffold | PnScaf1142 |
| Start | 36085 |
| End | 37449 |
| Direction | + |
Sequence
Transcript: 981 (bp)
ATGGAAGGACTAAATAGAATAAATAAGTGCATAGCTTGCATACTGATCGTGCAAATAGCAGCATGTGTAGCCCAAAATCCAATACGTGGAGAGCCCAGTTATAATAGGAGGGAACATTCGCTTATTAAACCATTTTTAACTGCTGGACTTTCTGTCCCGTACTGGGACTACACAGGATCCGTCATGTTCACGGATAAATTTGTTCGTTTAACTCCCGACGAGCAAAGTATGAGTGGCAGCATATGGAATCAGATACCTGTGTGGATCAGAAATTGGGAGATTGTCGTCGACTTCAAAGTGGCCGGCAAGGGCAAAGACCTCTTTGGCGATGGCTTCGTAATCTGGTACGCAAGAGACAGAATGATAACGGGGCCGGTTTTCGGAAGCAAGGATTTTTTCAGTGGCCTAGCGATTATTGTCGATACTTACTCAAATCACAATGGCCCTCACAATCACCAGCATCCTTATATTTCTGCTATGGTCAACAACGGCACATTGACGTATGACCACGATAGGGATGGAACGCACACACAATTAGCGGGCTGTGAAGCACGTTTCAGAAATGTCGAACATATGACGCAGATAAAGATTCGTTACGAGAACGACGTGCTCTCTCTGCAGACGGATCTCGAAAACAAGAACGAATGGAAAGAGTGCTTCTCAGTTGACGGCGTTGAGCTTCCCACGGGATATTATCTGGGTGCATCTGCAACAACGGGTGATTTGAGCGATAATCACCTCATTAATTCTATCAAATTTTTCGAGCTTGAGGGTGCTACCACGGCTGAGAGGTCTCAAATTATTCCAAGAGCGACAAAATTTGAGGAACCGCGCGAGCACGTTGACGATCCAAAACCTGGCTGGTCGAATCTTAAAATTTTTGTGGTGATCATGCTAGGCATGATTGCCGCAGTCATTCTTTCCATAGCTGGCTACATGTACTACGAAAAGTACCAGCAGAACAAGAAGAAAAGATTTTAC
Protein: 327 (aa)
MEGLNRINKCIACILIVQIAACVAQNPIRGEPSYNRREHSLIKPFLTAGLSVPYWDYTGSVMFTDKFVRLTPDEQSMSGSIWNQIPVWIRNWEIVVDFKVAGKGKDLFGDGFVIWYARDRMITGPVFGSKDFFSGLAIIVDTYSNHNGPHNHQHPYISAMVNNGTLTYDHDRDGTHTQLAGCEARFRNVEHMTQIKIRYENDVLSLQTDLENKNEWKECFSVDGVELPTGYYLGASATTGDLSDNHLINSIKFFELEGATTAERSQIIPRATKFEEPREHVDDPKPGWSNLKIFVVIMLGMIAAVILSIAGYMYYEKYQQNKKKRFY
| Type | Start | End | Length |
| CDS |
36085 |
36191 |
107 |
| CDS |
36261 |
36292 |
32 |
| CDS |
36412 |
36489 |
78 |
| CDS |
36614 |
36911 |
298 |
| CDS |
36981 |
37446 |
466 |
| intron |
36192 |
36260 |
69 |
| intron |
36293 |
36411 |
119 |
| intron |
36490 |
36613 |
124 |
| intron |
36912 |
36980 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313693 |
AGAP004407-PA [Anopheles gambiae str. PEST] gb|EAA09126.4| AGAP004407-PA [Anopheles gambiae str. PEST] |
1e-120 |
| InterPro |
IPR005052 |
Legume-like lectin |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Pfam |
PF03600.11 |
Citrate transporter |
0.18 |
| Pfam |
PF09976.4 |
Uncharacterized protein conserved in bacteria (DUF2133) |
0.013 |
| Pfam |
PF03388.8 |
Legume-like lectin family |
3.4e-90 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000423998 |
| H. sapiens |
ENSP00000366280 |
| C. quinquefasciatus |
CPIJ001653 |
| H. sapiens |
ENSP00000438501 |
| M. musculus |
ENSMUSG00000021484 |
| B. mori |
BGIBMGA010839-TA |
| A. aegypti |
AAEL010584 |
| H. sapiens |
ENSP00000425229 |
| H. sapiens |
ENSP00000264963 |
| P. vanderplanki |
Pv.05637 |
| A. gambiae |
AGAP004407 |
| H. sapiens |
ENSP00000396391 |
| D. plexippus |
DPOGS202082PA |
| T. castaneum |
TC012578 |
| N. vitripennis |
NV17786-PA |
| H. melpomene |
HMEL003149-PA |
| H. sapiens |
ENSP00000303366 |
| P. humanus |
PHUM457100-PA |
| S. invicta |
SI2.2.0_09590 |
| A. mellifera |
GB14056-PA |
| H. sapiens |
ENSP00000441701 |
| D. melanogaster |
FBgn0039160 |