MidgeBase gene description page [Pn.01106]
Outline
| Gene ID | Pn.01106 |
| Type | Protein coding gene |
| Scaffold | PnScaf1054 |
| Start | 80856 |
| End | 82590 |
| Direction | + |
Sequence
Transcript: 1242 (bp)
ATGAAAATTAGTCGACATAGTGGAAGTTTGTTAACGAATTTAACACAAGTTCAAGAGTTTAAAGACCACATTGTGACGAGTAGCTTAGATAATTCAGTAATGATTCGAATGTTTTATCGAGGCTTTCGCGAGCTGTACAGTAATTTGTTGCGAGGCACTGGAAACCGTCATCATCGTGAACGCTACCAGAAAATAATCTCGTCTCAAGTGCCATTTCCATGCAACGTTAAATACTCTCGCAGCGAAAAGAAACCGAAAAGTGTTCATCAATTGAGACCCGGAGACATCGATATTATTGCTGCTATGGGCGATTCATTAACAAGTGCAACAGCCGCAAATTCAGCAGGTCTCCACGAGTTACTGGTTGAAAACCGAGGATTGAGTTGGAGTATAGGTGGCCAGGGCTCGTGGCGCACCCATTTAACTTTGCCGAACATCGTAAAAGTCTTCAATCCTAGTTTATTCGGATTTTCGCTCTCTGATGCGTACAACGTTCATAAAGATGCGCAATTTAATATCGCAGAAAATATCGCGACGACTTCGGATATGCCATATAACGCTAAGATTTTGATGCAACGAATAATGCAAGATCCAAGAGTGAACATGAAAAAACACTGGAAACTACTGACTCTAATGATCGGAGGAAATGATTTTTGTTCAGATATATGCCACCAAAAAAATGCAACCCATTGGATCAATGAAGTCCAGCAAAAATATTTGATTCAAACGCTTCGATACTTGCGTTTTGCTTCTCCAAGAACACTTGTGAATTTAGTGCCTTCGCCTTTGGTGAATCTTCTATTTTCCGTTGACCGAGTTGCCATACCGCTATCATGTTATTTATCAATGCCAATTGAATGTAGCTGTTTATTCGGCAAAAAGTACTCCCAAAATCGGGAGCTTTATAGAGTTCTTGAAAGGAGATTCACTCAAATAATGGAGGAGATTAGTTTTATGCCCGAATTTCATACAAACGAATTTACGGTTGTCTATCAACCATTTTTCAAAGATGCGAGCATTTTTTACGAGAGTTCGAATAAACCAGATCTCACAATCATGGCCATCGATTGTCTCCATCTCAGCCAGAAAGGACATGCACTGTCTGCAAACGCCATTTGGAATAACATGGTAGAGCCCGTTGGGAAGAAATCATTAGGACTTCAGCCGCTCTTTAAAAAGTTCAATTGCCCCAGCAATAGACACCCGTACATATTCACAAATTATAATAGCAACAATTTCATT
Protein: 414 (aa)
MKISRHSGSLLTNLTQVQEFKDHIVTSSLDNSVMIRMFYRGFRELYSNLLRGTGNRHHRERYQKIISSQVPFPCNVKYSRSEKKPKSVHQLRPGDIDIIAAMGDSLTSATAANSAGLHELLVENRGLSWSIGGQGSWRTHLTLPNIVKVFNPSLFGFSLSDAYNVHKDAQFNIAENIATTSDMPYNAKILMQRIMQDPRVNMKKHWKLLTLMIGGNDFCSDICHQKNATHWINEVQQKYLIQTLRYLRFASPRTLVNLVPSPLVNLLFSVDRVAIPLSCYLSMPIECSCLFGKKYSQNRELYRVLERRFTQIMEEISFMPEFHTNEFTVVYQPFFKDASIFYESSNKPDLTIMAIDCLHLSQKGHALSANAIWNNMVEPVGKKSLGLQPLFKKFNCPSNRHPYIFTNYNSNNFI
| Type | Start | End | Length |
| CDS |
80856 |
81138 |
283 |
| CDS |
81352 |
81664 |
313 |
| CDS |
81753 |
81799 |
47 |
| CDS |
81896 |
82010 |
115 |
| CDS |
82104 |
82587 |
484 |
| intron |
81139 |
81351 |
213 |
| intron |
81665 |
81752 |
88 |
| intron |
81800 |
81895 |
96 |
| intron |
82011 |
82103 |
93 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001862811 |
phospholipase b [Culex quinquefasciatus] gb|EDS37503.1| phospholipase b [Culex quinquefasciatus] |
1e-164 |
| InterPro |
IPR013831 |
Esterase, SGNH hydrolase-type, subgroup |
|
| InterPro |
IPR001087 |
Lipase, GDSL |
|
| InterPro |
IPR013830 |
Esterase, SGNH hydrolase-type |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0016788 |
hydrolase activity, acting on ester bonds |
|
| Pfam |
PF00657.17 |
GDSL-like Lipase/Acylhydrolase |
2.2e-17 |
| Pfam |
PF13472.1 |
GDSL-like Lipase/Acylhydrolase family |
0.00032 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.03377 |
| Pn.10396 |
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC000337 |
| P. vanderplanki |
Pv.13791 |
| A. mellifera |
GB10753-PA |
| C. quinquefasciatus |
CPIJ012575 |
| P. vanderplanki |
Pv.01509 |
| P. vanderplanki |
Pv.09340 |
| T. castaneum |
TC000336 |
| A. mellifera |
GB17646-PA |
| A. mellifera |
GB15964-PA |
| A. aegypti |
AAEL010369 |
| A. gambiae |
AGAP006396 |
| H. sapiens |
ENSP00000330729 |
| A. gambiae |
AGAP011513 |
| A. mellifera |
GB18032-PA |
| C. quinquefasciatus |
CPIJ016878 |
| H. sapiens |
ENSP00000416440 |
| A. aegypti |
AAEL005959 |
| N. vitripennis |
NV16493-PA |
| A. mellifera |
GB14550-PA |
| H. sapiens |
ENSP00000437426 |
| D. plexippus |
DPOGS210216PA |
| P. humanus |
PHUM596190-PA |
| N. vitripennis |
NV16494-PA |
| H. melpomene |
HMEL013774-PA |
| H. sapiens |
ENSP00000391810 |
| A. gambiae |
AGAP006395 |
| H. sapiens |
ENSP00000384187 |
| D. melanogaster |
FBgn0036939 |
| H. sapiens |
ENSP00000330442 |
| P. humanus |
PHUM596330-PA |
| P. humanus |
PHUM596210-PA |
| B. mori |
BGIBMGA002541-TA |
| H. sapiens |
ENSP00000399712 |
| C. quinquefasciatus |
CPIJ016880 |
| M. musculus |
ENSMUSG00000029134 |
| A. mellifera |
GB19107-PA |
| H. sapiens |
ENSP00000392493 |
| S. invicta |
SI2.2.0_08885 |