MidgeBase gene description page [Pn.01072]
Outline
| Gene ID | Pn.01072 |
| Type | Protein coding gene |
| Scaffold | PnScaf1049 |
| Start | 6968 |
| End | 11357 |
| Direction | + |
Sequence
Transcript: 1887 (bp)
ATGGTCAAGCAAGGTTCCTACAACTTGGGATTTGACGCGACTAATGAGGACATAAAAGCGAGCAATGGCAGCAATCTGACGACAATCAAAGTAGACGATAAAGCTCTTGCGACCAACGAAGGCAATGGCGATATTGTTCACGATGAGGACGAGCATGGGCCGGAGCGCGCGACATGGGGTCATGGTCTTGAATTCCTAATGAGCTGCATCTCGCTCTCGGTGGGCTTGGGAAATATTTGGCGATTTCCCTTCACGTGCTACGAGAACGGAGGTGGAGCATTTTTGATTCCCTACATAATCGTGTTGATGCTCATCGGCAAGCCGATTTACTACTTCGAGATGATTCTCGGGCAATTGACGTCAAAGGGGTCCGTGAAGGCCTCGTCGACCATTCCGGCGTTGAAGGGAATCGCCATCGGACAGCAGTTCGGAACGCTTCTCATCGTCACCTACTACGTCTCGCTCATCGCGCTCACGCTCTTCTACATGATCAAAAGCTTCTCGGCGACACTCCCCTGGAGCTTCTGCTGGGAGGAGTGGAGCGATGTGCTTTGCTTTCCATCGGATCCGAGTCTTCAGAACGACACCGACAGGAATCCTAATGCAACCAGCTCGAGTGAACTCTACTTCATTCGAGAAGTGATTAAGGAAAAGTCGAGCATTAGTGACGGACTGGGTTTACCAGACTGGGAGCTAACACTTTGGCTTCTTCTCGCGTGGGTCGTCATTTATCTTGTCATTATAAAAGGCGTTAAAAGCTCAGGCAAGGTGTCATATTTCCTCGCCCTCTTCCCCTATTTCGTGCTAATAACTCTATTAGCGCGCGCGTCAACGCTTGAAGGCACATGGAACGGAATTAAGTATTTTATAACGCCCGACTTTAAGAAGCTTATTGAGCCACAAGTATGGTATGCAGCGACAACTCAGCTGTTCTTTTCTCTCTCCGTCGGACAGGGAACGATTATAATGTTTTCCTCATATAACCGATTTGATCACAACATTCACAGAGACGCCATGATTGTTACAACGATGGACACGTTTACGAGTCTGTTGGGTGGTTTCACGATTTTCGGCATCCTCGGCAACCTGGCCTACAACCTCGGCGAGGAAGACGTTGGCAATGTCATTAAGAGCGGAGGAAGTGGCCTCGCTTTCATTTCATATCCAGAAGCAATTTCAAAGTTCAAATTTGTTCCGCAGCTCTTTGCCGTTCTCTTCTTCTTCATGCTCTTTACGCTCGGTGTTGGTAGCGCTGTCGGCTTGCAGAGCGCCATCGTTGCAAATTTAATGGACATCTTTCCGAAAGTTAAAAATTACATAATGGCCCTCGTTTGCTGCACAATTGGCTTATTCATTGGACTCCTCTACGTCACGCCAGTCGATCACTACGGAGGAACTTTCCTGATATTCGCGTTGGCAATTTTCCACATAACAGGCGTGTTCTGGATATATGGCATCGAGAAATTCTGCTACGACGTCGAGTTCATGCTAAACCGAAAAGTAACCATGTTCTGGAGACTTTCATGGGTATTTATCACTCCTCTTCTGCTCATTGTTATCTTCATCTACACGATGGTGAAGTCAGAGCATCCGACTTACGGCGGAAGAGCTTTTCCAGAAGTTGCCATCATTGCTGGCTGGGTCATTTTTGCTGTGGGCGTTTCTCAGTTGTTCATCTGGTCAGCGTGGTTCGTCATGCGTGATCCGAACAAAATGGAAGCCTTTAAGGCACTTTTCAGACAAAACCCAGAATGGGGACCAAAATCACCGAAAATATTCAGGGAATGGAATGCCTACAAAAACAGTCGACTGGACAAGAGAAGAGAGCAATCGAAGAATCACGGAAGCTTCAAGAAATTTTTCAACATTCTCCTCGACAAATACGAG
Protein: 629 (aa)
MVKQGSYNLGFDATNEDIKASNGSNLTTIKVDDKALATNEGNGDIVHDEDEHGPERATWGHGLEFLMSCISLSVGLGNIWRFPFTCYENGGGAFLIPYIIVLMLIGKPIYYFEMILGQLTSKGSVKASSTIPALKGIAIGQQFGTLLIVTYYVSLIALTLFYMIKSFSATLPWSFCWEEWSDVLCFPSDPSLQNDTDRNPNATSSSELYFIREVIKEKSSISDGLGLPDWELTLWLLLAWVVIYLVIIKGVKSSGKVSYFLALFPYFVLITLLARASTLEGTWNGIKYFITPDFKKLIEPQVWYAATTQLFFSLSVGQGTIIMFSSYNRFDHNIHRDAMIVTTMDTFTSLLGGFTIFGILGNLAYNLGEEDVGNVIKSGGSGLAFISYPEAISKFKFVPQLFAVLFFFMLFTLGVGSAVGLQSAIVANLMDIFPKVKNYIMALVCCTIGLFIGLLYVTPVDHYGGTFLIFALAIFHITGVFWIYGIEKFCYDVEFMLNRKVTMFWRLSWVFITPLLLIVIFIYTMVKSEHPTYGGRAFPEVAIIAGWVIFAVGVSQLFIWSAWFVMRDPNKMEAFKALFRQNPEWGPKSPKIFREWNAYKNSRLDKRREQSKNHGSFKKFFNILLDKYE
| Type | Start | End | Length |
| CDS |
6968 |
7015 |
48 |
| CDS |
8339 |
8422 |
84 |
| CDS |
8580 |
8718 |
139 |
| CDS |
8784 |
9144 |
361 |
| CDS |
9215 |
9485 |
271 |
| CDS |
9981 |
10040 |
60 |
| CDS |
10117 |
10160 |
44 |
| CDS |
10223 |
10375 |
153 |
| CDS |
10432 |
10471 |
40 |
| CDS |
10567 |
10744 |
178 |
| CDS |
10846 |
11354 |
509 |
| intron |
7016 |
8338 |
1323 |
| intron |
8423 |
8579 |
157 |
| intron |
8719 |
8783 |
65 |
| intron |
9145 |
9214 |
70 |
| intron |
9486 |
9980 |
495 |
| intron |
10041 |
10116 |
76 |
| intron |
10161 |
10222 |
62 |
| intron |
10376 |
10431 |
56 |
| intron |
10472 |
10566 |
95 |
| intron |
10745 |
10845 |
101 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659215 |
sodium/shloride dependent amino acid transporter [Aedes aegypti] gb|EAT39789.1| sodium/shloride dependent amino acid transporter [Aedes aegypti] |
0.0 |
| InterPro |
IPR000175 |
Sodium:neurotransmitter symporter |
|
| Gene Ontology(BP) |
GO:0006836 |
neurotransmitter transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005328 |
neurotransmitter:sodium symporter activity |
|
| Pfam |
PF00209.13 |
Sodium:neurotransmitter symporter family |
1.3e-142 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07893 |
| Pn.10655 |
| Pn.01071 |
| Pn.16006 |
| Pn.03776 |
| Pn.03777 |
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB15100-PA |
| D. melanogaster |
FBgn0034381 |
| C. quinquefasciatus |
CPIJ019019 |
| A. aegypti |
AAEL003619 |
| A. mellifera |
GB13257-PA |
| D. melanogaster |
FBgn0028886 |
| C. quinquefasciatus |
CPIJ020187 |
| C. quinquefasciatus |
CPIJ012067 |
| A. aegypti |
AAEL015287 |
| P. vanderplanki |
Pv.02853 |
| A. mellifera |
GB18422-PA |
| A. gambiae |
AGAP010857 |
| C. quinquefasciatus |
CPIJ019018 |
| D. plexippus |
DPOGS204331PA |
| A. gambiae |
AGAP010861 |
| C. quinquefasciatus |
CPIJ012063 |
| S. invicta |
SI2.2.0_00209 |
| T. castaneum |
TC006379 |
| S. invicta |
SI2.2.0_02913 |
| P. vanderplanki |
Pv.07765 |
| C. quinquefasciatus |
CPIJ019020 |
| P. vanderplanki |
Pv.13867 |
| P. vanderplanki |
Pv.07766 |
| C. quinquefasciatus |
CPIJ012066 |
| A. aegypti |
AAEL008424 |
| A. aegypti |
AAEL003640 |
| C. quinquefasciatus |
CPIJ012056 |
| A. aegypti |
AAEL003641 |
| C. quinquefasciatus |
CPIJ012065 |
| H. melpomene |
HMEL004634-PA |
| A. aegypti |
AAEL003626 |
| P. vanderplanki |
Pv.07768 |
| A. gambiae |
AGAP010865 |
| C. quinquefasciatus |
CPIJ012055 |
| D. plexippus |
DPOGS204332PA |
| P. vanderplanki |
Pv.07767 |
| D. melanogaster |
FBgn0035969 |
| A. aegypti |
AAEL003627 |
| P. humanus |
PHUM294590-PA |
| B. mori |
BGIBMGA007228-TA |
| D. melanogaster |
FBgn0033708 |
| T. castaneum |
TC006378 |
| D. melanogaster |
FBgn0033443 |
| D. melanogaster |
FBgn0029762 |
| A. aegypti |
AAEL003624 |
| A. aegypti |
AAEL003638 |
| C. quinquefasciatus |
CPIJ019526 |
| A. gambiae |
AGAP010860 |
| N. vitripennis |
NV50399-PA |