MidgeBase gene description page [Pn.01038]
Outline
| Gene ID | Pn.01038 |
| Type | Protein coding gene |
| Scaffold | PnScaf1036 |
| Start | 271 |
| End | 1185 |
| Direction | - |
Sequence
Transcript: 912 (bp)
ATGCTGCCGATGAACACGGGCGTGGAGGCGGCGGAGAGCGCGGTGAAGTTCGCGCGCAAATGGGGCTACAAGGTGAAGAAAATCCCCGCGAACCAGGCCAAGGTTGTGTTCTGCGAGAACAACTTCTGGGGCCGCTCGATCGCCGCCGTCTCGGCCTCGACCGACCCGACGGCGTACGAGAACTACGGGCCGTTTGTGCCGGGCTTCGTGAACATCCCGTACGACGACGTGGAGGCGCTGGAGCGCGAGCTGCAGGACCCCAACGTGTGCGCCTTCATGGCGGAGCCGATCCAGGGCGAGGCCGGCGTGGTGGTGCCGTCGGACGGCTACCTCACGAAGGTGCGCGAGCTCTGCACCAAGCACAACGTGCTGTTCGTGGCGGACGAGATCCAGACGGGCTTGGGCCGCACGGGCCGGCGGCTGTGCGTCGACCACGAGGCCGTCCGGCCCGACATGGTCGTGCTGGGCAAGGCGCTGTCGGGCGGCGTCTATCCCATCTCGGCCGTCCTCGCCGACCGCCACGTGATGGACTGCATCGAGGCGGGCACGCACGGCTCGACATACGGCGGCAACCCGCTCGCATGCAAGGTCGCCGTCGCCGCCCTCAAGGTGCTCGAGAACGAGCGGCTCGCCGAGAACGCCGACAAGATGGGCGCGCTGCTGAGGCGCGGGCTCGCCGAGCTCGACAAGGACCTCGTGCTGGCGTGCCGCGGCAAGGGCCTGCTCAACGCCATCGTCATCAACAGCGACCGCATCGACGCCTTCGACCTCTGCCTCAAGCTCAAGGACAACGGGCTGCTGTCGAAGCCCACGCACGACAACATCCTGCGACTCGCGCCGCCGCTCATCATCAACGAGGAGCAGATCCTCGAATCCCTCGACATCATCCGCCTCACGCTCAAGCAGGTCAAG
Protein: 304 (aa)
MLPMNTGVEAAESAVKFARKWGYKVKKIPANQAKVVFCENNFWGRSIAAVSASTDPTAYENYGPFVPGFVNIPYDDVEALERELQDPNVCAFMAEPIQGEAGVVVPSDGYLTKVRELCTKHNVLFVADEIQTGLGRTGRRLCVDHEAVRPDMVVLGKALSGGVYPISAVLADRHVMDCIEAGTHGSTYGGNPLACKVAVAALKVLENERLAENADKMGALLRRGLAELDKDLVLACRGKGLLNAIVINSDRIDAFDLCLKLKDNGLLSKPTHDNILRLAPPLIINEEQILESLDIIRLTLKQVK
| Type | Start | End | Length |
| CDS |
274 |
1185 |
912 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002043600 |
GM16950 [Drosophila sechellia] gb|EDW49811.1| GM16950 [Drosophila sechellia] |
1e-122 |
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR010164 |
Ornithine aminotransferase |
|
| InterPro |
IPR005814 |
Aminotransferase class-III |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(MF) |
GO:0008483 |
transaminase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF00676.15 |
Dehydrogenase E1 component |
0.069 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
0.023 |
| Pfam |
PF00202.16 |
Aminotransferase class-III |
8e-85 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000030934 |
| B. mori |
BGIBMGA003564-TA |
| A. mellifera |
GB12326-PA |
| D. plexippus |
DPOGS215667PA |
| P. vanderplanki |
Pv.11174 |
| A. aegypti |
AAEL005289 |
| H. sapiens |
ENSP00000357838 |
| H. melpomene |
HMEL014138-PA |
| T. castaneum |
TC005134 |
| S. invicta |
SI2.2.0_08019 |
| P. humanus |
PHUM513190-PA |
| H. sapiens |
ENSP00000439042 |
| C. quinquefasciatus |
CPIJ004400 |
| A. mellifera |
GB15171-PA |
| S. invicta |
SI2.2.0_02212 |
| C. quinquefasciatus |
CPIJ004401 |
| N. vitripennis |
NV16319-PA |
| A. gambiae |
AGAP004793 |
| N. vitripennis |
NV16318-PA |
| D. melanogaster |
FBgn0022774 |