MidgeBase gene description page [Pn.01034]
Outline
| Gene ID | Pn.01034 |
| Type | Protein coding gene |
| Scaffold | PnScaf1035 |
| Start | 18108 |
| End | 24448 |
| Direction | - |
Sequence
Transcript: 1176 (bp)
ATGGCTCCTAATTCTTTAAGCAGTGATACAATCGCGAACAATTCTTGTAATTCAGTAAAACCCGAAAATTCCGGTGTAGATGTGAAGCCGAGCGAAGGTCAAGAAGATTGGACATGGACGTGGAGAGATGTGAAGCCTTTGAATACCCTTGTGCTCGTATACCTTCATATTGCCACAGTTTATAGTTTTTTCCATTTACCTCACTGTTGGCAAACGTACTTGTTGCAATTTTTAATTCTTCTCGGCGCAGCATTCGGTGTCACTGCGGGCAGTCATAGATACTTTACTCATAAGTCATACAGAGCTAATAAAGCTCTAAAATATTTGTTAATTTTCCTACAAACGCTGAGTGCACAAGAGGACATCTTAAAATGGGTACGTGATCACAGAGTTCACCACAAATTCACAGACACCAATGCAGATCCCCACAACTCAAAACGTGGATTTTTCTTCTCTCATTGTGGTTGGCTATTTATTCGAAAGCATCCTGATGTTACCACTTTCGGGAAAAAAGTTGATATGTCTGACTTGGAACACGATAAAGTGCTTTTGTTCCATAAAATGATTTACATGCCTGCATCGTGGGTTGTAGCTTTTATAGGACCAGTTTGGGGTGCTCATTATTTATGGGGAGAGGACTTGAGTGCATCATGGCACTTTAATATTGTTCGTTACACTCTTGGGCTTCACGTTAATTGGAGTATTAATTCATTTGCGCATATTTGGGGAATGAGACCTTTCGACAGGAACAACTCTTCCAGAGATAGCTACATTTTCGGCTTCTTAGCTTTTGGTGAAGGATGGCACAATTTTCATCACGCATTTCCATGGGACTACAAAACCGGCGAACTCGGAAATTATTGGTTCAACTTTTCAATGATCTTCATCGACTTCTTCGCATGGCTAGGTTGGGCTACTGATCTTAAAACTGTTCCAGATAGCGTTGTGAAGAAGCGAGTTCTAAGAACAGGAGATGGTAGCCATAGATACTCAATTGAAGCAAAAAGGAATAACGAAAAGATTGAAGAAGAAGTTAAAAATAACAACGATGGAGAAAGAGATTTGGATCATTTTTGGGGCTGGGGTGATGAAGACATGCAGAATGAAGACATTCAGGACCAATCACTTAAATTTCTCGTAAAAAGTGCAATAAAACTTCTTTTTCTGATACGTATA
Protein: 392 (aa)
MAPNSLSSDTIANNSCNSVKPENSGVDVKPSEGQEDWTWTWRDVKPLNTLVLVYLHIATVYSFFHLPHCWQTYLLQFLILLGAAFGVTAGSHRYFTHKSYRANKALKYLLIFLQTLSAQEDILKWVRDHRVHHKFTDTNADPHNSKRGFFFSHCGWLFIRKHPDVTTFGKKVDMSDLEHDKVLLFHKMIYMPASWVVAFIGPVWGAHYLWGEDLSASWHFNIVRYTLGLHVNWSINSFAHIWGMRPFDRNNSSRDSYIFGFLAFGEGWHNFHHAFPWDYKTGELGNYWFNFSMIFIDFFAWLGWATDLKTVPDSVVKKRVLRTGDGSHRYSIEAKRNNEKIEEEVKNNNDGERDLDHFWGWGDEDMQNEDIQDQSLKFLVKSAIKLLFLIRI
| Type | Start | End | Length |
| CDS |
18111 |
18119 |
9 |
| CDS |
19801 |
19848 |
48 |
| CDS |
20769 |
20803 |
35 |
| CDS |
20882 |
21058 |
177 |
| CDS |
21608 |
21727 |
120 |
| CDS |
21802 |
22025 |
224 |
| CDS |
22098 |
22226 |
129 |
| CDS |
22301 |
22661 |
361 |
| CDS |
24376 |
24448 |
73 |
| intron |
18120 |
19800 |
1681 |
| intron |
19849 |
20768 |
920 |
| intron |
20804 |
20881 |
78 |
| intron |
21059 |
21607 |
549 |
| intron |
21728 |
21801 |
74 |
| intron |
22026 |
22097 |
72 |
| intron |
22227 |
22300 |
74 |
| intron |
22662 |
24375 |
1714 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ABF72885 |
acyl-CoA desaturase-like [Belgica antarctica] |
1e-95 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF00487.19 |
Fatty acid desaturase |
1.5e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.11648 |