MidgeBase gene description page [Pn.01006]
Outline
| Gene ID | Pn.01006 |
| Type | Protein coding gene |
| Scaffold | PnScaf1007 |
| Start | 21105 |
| End | 23000 |
| Direction | + |
Sequence
Transcript: 1356 (bp)
ATGAATAAAAAAGATGATAAGAAAGCTAAGCTGATACAGGAAAAATGCAATACGATTCTCAATCAATTGCTGCGCGATGAAGATAACAAATATTGCTGCGACTGCGACCAGAAAGGACCGCGTTGGGCAAGCTGGAATTTGGGAATTTTTCTCTGCATCCGCTGTGCTGGAATTCATCGAAATTTAGGTGTTCATATTTCGCGAGTGAAGTCAGTCAATTTAGATTCTTGGTCGCCGGAGCAAGTCGTGTGTCTTCAGCAAATGGGAAATTCTCGTGCCCGAGCAGTGTACGAGGCCTTATTATCTGATAATTTTCGTCGTCCTCAGACCGATTCCGGGTTAGAGAGCTTTATTCGCTCGAAGTACGAGCAAAAGAAGTACATTGCCAGAGAATGGATTCCGCCGCCGTTTCCGCCAAAAGTTGACTGGGACAAGGAGATCGAAGAGGAGCTTGAGAACCAGAAGCGAAAGAAGAAATCTTCCTCGACGTCGTCCGCCACGACAATTGCAGAGAGCGCGCCAGCTGTGAAGCCGCCTGCGTCTGCAGCGTCAAACATTATACCCGCGCCCTTACCAAAACCACACTCACCAAAAAACTCGAGACTCGAGGCACGGAAAAGCGCATCATCGGTGTCGTCAACATCGGCCGTTGCTAGCAGCAACAGCAACACCACAAACTCAACGAACACGGACTTGTTAGGATTAGAAACCGCGATACATGCGCCAGTCACAGCTGCCGCTCCAATTCAGAATTCGACGACCCAGCAAAAAAGCGCCGCTGAGAGTTCCATCACTGATACTTTTGACTTTTTCTCCGATCATCAACAACCGATGTCATTGCCCGCTGCCGCGACTCAGAACAAAAATGAAGCGCGCAATGGCAACGACAGTTCATTGAAACAGGAGGAGGACGATTTCTTCAACCAAAAGTCTTTGGAAAACGGTGGTGGTGGCGGTGGTGGCAGCAGCGGAGTAAAACTGACGAACGATAAAATTTTGGCGCTCTACGGAAGCGCAACCTCATCTCCTCAACTGCCGCAGTTTACCGCCAATTTCCAACATCAAACTCAACAGCCGTTGTCGCTGCAAGACTCGTTCTTCTACGGCCAACAACAGCAGCAGCAGCCGGCAGTGGCAAATGCGTCTCTCTTCAAAACGCAAATTCCTCAACAGCAATTCTTTCCAAATGTTGGCCAACAGCCGGCCATGCAAAGTCAGCCATCCTCCTTGATGTTCAATGGTAATAACAACTATTTTGGAAATGTGGGCTTTGGAACGATGCAGTCGCAACAGATCAACAAGCTGAACGAGGAGAACATAAGAAAAATCGAAAGTCTCAATTTCAACAATTTTAAA
Protein: 452 (aa)
MNKKDDKKAKLIQEKCNTILNQLLRDEDNKYCCDCDQKGPRWASWNLGIFLCIRCAGIHRNLGVHISRVKSVNLDSWSPEQVVCLQQMGNSRARAVYEALLSDNFRRPQTDSGLESFIRSKYEQKKYIAREWIPPPFPPKVDWDKEIEEELENQKRKKKSSSTSSATTIAESAPAVKPPASAASNIIPAPLPKPHSPKNSRLEARKSASSVSSTSAVASSNSNTTNSTNTDLLGLETAIHAPVTAAAPIQNSTTQQKSAAESSITDTFDFFSDHQQPMSLPAAATQNKNEARNGNDSSLKQEEDDFFNQKSLENGGGGGGGSSGVKLTNDKILALYGSATSSPQLPQFTANFQHQTQQPLSLQDSFFYGQQQQQQPAVANASLFKTQIPQQQFFPNVGQQPAMQSQPSSLMFNGNNNYFGNVGFGTMQSQQINKLNEENIRKIESLNFNNFK
| Type | Start | End | Length |
| CDS |
21105 |
21158 |
54 |
| CDS |
21607 |
21739 |
133 |
| CDS |
21829 |
22997 |
1169 |
| intron |
21159 |
21606 |
448 |
| intron |
21740 |
21828 |
89 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656913 |
smap1 [Aedes aegypti] gb|EAT45167.1| smap1 [Aedes aegypti] |
2e-87 |
| InterPro |
IPR001164 |
Arf GTPase activating protein |
|
| Gene Ontology(BP) |
GO:0032312 |
regulation of ARF GTPase activity |
|
| Gene Ontology(MF) |
GO:0008060 |
ARF GTPase activator activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF09032.6 |
Siah interacting protein, N terminal |
0.052 |
| Pfam |
PF10657.4 |
Photosystem P840 reaction centre protein PscD |
0.1 |
| Pfam |
PF01412.13 |
Putative GTPase activating protein for Arf |
4.7e-41 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ006465 |
| H. sapiens |
ENSP00000313382 |
| N. vitripennis |
NV11393-PA |
| H. sapiens |
ENSP00000361803 |
| H. sapiens |
ENSP00000359481 |
| H. sapiens |
ENSP00000442835 |
| H. sapiens |
ENSP00000361793 |
| D. melanogaster |
FBgn0033349 |
| M. musculus |
ENSMUSG00000026155 |
| D. plexippus |
DPOGS202560PA |
| P. humanus |
PHUM433100-PA |
| B. mori |
BGIBMGA004337-TA |
| A. gambiae |
AGAP012088 |
| H. sapiens |
ENSP00000359484 |
| T. castaneum |
TC009481 |
| A. aegypti |
AAEL003509 |
| M. musculus |
ENSMUSG00000032870 |
| P. vanderplanki |
Pv.07830 |
| A. mellifera |
GB10609-PA |
| H. melpomene |
HMEL013195-PA |
| S. invicta |
SI2.2.0_04223 |