MidgeBase gene description page [Pn.01002]
Outline
| Gene ID | Pn.01002 |
| Type | Protein coding gene |
| Scaffold | PnScaf1007 |
| Start | 113 |
| End | 1685 |
| Direction | + |
Sequence
Transcript: 414 (bp)
ATGAATTTTTTGAAGCAAATGTTTAATGTCGCAAAATTATTGACAACCGAAGCAATTACAACCATGCAAACCTGCAACGGCTCGAGTCTATATCAAATGCATCGCAAGGGACCTCACTTCAAATTTCGTCCTCCACGCCAGCCGCTCGACGGAAAGCCATTTGCCAAAGGTGTCGTGCTCAAGACTCTCATAAAGAAACCGAAGAAACCTAATTCTGCTAATCGAAAATGTGTTCTCGTGAGGCTCTCGACTGGAAAAGAGATGGTGGCATATGTGCCTGGCATCGGTCACAACTTGCAAGAGCATAATGTCGTGCTTTGCAGAGTCGGCAGACTTCGTGACACGCCCGGTGTCAAGATCAAGTGCGTGCGCGGTGCATACGATCTTCCGCACGTAATAAAACCAACAGCTAAG
Protein: 138 (aa)
MNFLKQMFNVAKLLTTEAITTMQTCNGSSLYQMHRKGPHFKFRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYVPGIGHNLQEHNVVLCRVGRLRDTPGVKIKCVRGAYDLPHVIKPTAK
| Type | Start | End | Length |
| CDS |
113 |
164 |
52 |
| CDS |
1321 |
1682 |
362 |
| intron |
165 |
1320 |
1156 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002057391 |
GJ17060 [Drosophila virilis] gb|EDW62877.1| GJ17060 [Drosophila virilis] |
3e-55 |
| InterPro |
IPR006032 |
Ribosomal protein S12/S23 |
|
| InterPro |
IPR012340 |
Nucleic acid-binding, OB-fold |
|
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR005679 |
Ribosomal protein S12, bacteria |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(CC) |
GO:0015935 |
small ribosomal subunit |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00164.20 |
Ribosomal protein S12 |
1.9e-31 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000384952 |
| D. plexippus |
DPOGS204723PA |
| A. mellifera |
GB10531-PA |
| H. melpomene |
HMEL011711-PA |
| H. sapiens |
ENSP00000308845 |
| A. aegypti |
AAEL008169 |
| D. melanogaster |
FBgn0003714 |
| M. musculus |
ENSMUSG00000045948 |
| H. sapiens |
ENSP00000384579 |
| S. invicta |
SI2.2.0_03381 |
| P. humanus |
PHUM286760-PA |
| T. castaneum |
TC007491 |
| B. mori |
BGIBMGA008248-TA |
| P. vanderplanki |
Pv.07623 |
| A. gambiae |
AGAP013102 |
| C. quinquefasciatus |
CPIJ008389 |
| N. vitripennis |
NV10193-PA |