MidgeBase gene description page [Pn.00971]
Outline
| Gene ID | Pn.00971 |
| Type | Protein coding gene |
| Scaffold | PnScaf971 |
| Start | 44026 |
| End | 47859 |
| Direction | + |
Sequence
Transcript: 3432 (bp)
ATGTTTGCGAGAAATTTTGCTGTAAAATACAAGCCGATCAAATCGAATTTTGTGGTATATGTGTCATGGTCAACTGCAATTCAAGCAACGAACCCCTTTGAAGAGGAAGAAATTGGAATAAATTCGCAGTTAGCTGAACTTTGTGGCTTGAAAGAAGGCACAAACGTATCATGCTCGGTGATCCAGAATACATCTCCTGTGAGGTCGATTTCGATTTCCTTATCGGATGAAGACTACAAAGTGGCTGAATGTTCTCTTGACCGCATTCAATACGATTTGCTGGATCAGGTCTGTGTCGTTGGGCGCTATCAGCCCATTGTCATATGGATGAATAAATCAATTGCCATCAACGCTATCGTGGACAACTTGAGTCCATCTTTCAACTATGGACGAATACAGAGAGATACTCAAATATCAATAAATCGGAAAATGACCCCTGACTTTCTTCGGAAAAAGAAGCCGAATGATGCAGACGATTCGTCGGACGCGACGAAAATAAAACGTATGAGTGCGATTGAGAGATCAGAAACAGTCGACCTGTCGAGCATGCCGCACTTAAGGCGCAATAATAGTTTCATTGATTCAAGAAAATTTTTAGAGCCGCCAAGCGGGGGCATAGGATCTGTCAACGATGTGAGCAGCAGGCGGACTTCGAACGGTTGGTCGGATTCAATGTACAACGGTGAGAGAACTTCAAAGAAACCGCCGCCTGCGCTGAGTCCACGCAGCAGTATCAAAAGGACCAAAGACAGTAGTGAAAATGGTAGGAACTCATTAACAAACGGTGATACAATTAAGCGAAACTCACTAACACCAAGTGCAAGTTTGAGCAATATGAAGTCATTGAACGAGAAAAGAGACAGTGCGGAGAAGGATTTTGGTCCGATCTCGAGTAGCCTTAGTTCAAGTAATATTCGCAGAGTTCAAGAAAAGTCTAACAAGTTTCTCGAACAGCTCTCGAATCAAGAGTCGCCAGCACGAAAACTATTAAACAGTGCTAGTGCAAGCAGCATAAATTTGCCACAGGCTCTCACCGCTCCGACGCCTTCTGTAGTGAAAACTGAAACGAATCAAAATCACAAACTAGCTCTGGAGGACATAAAGAAGGCACTCCTGCGTGAGACACAGAAAAGACATTTTATGAAAGTAAGAATAGTGAGTGATAAGAAGAGGTTGGAAAAATTCATGCAGATCAACGATGTTTACATATCAAAGTCATCGTCCGTAAATATCAACCAGATTCACAAAGTGCGCACGAGAGAAGAAAAAGAATATCATGTCCGCATCAAGTGCAATGATTCAGCACCCGAGCAGACTATTGAGATTCATCCGATTCTTGCGAAAGTACTTAATATCGAGCAAGGCTATCGAGCGGAATTATTTGAAACGAAGCTTGTCTGCAACTGCATTGAAAACCTTGAAATAATTCCGCACTCGGACATTTCCGAAAATAACTTTGGCGTTCAAATAGCAAAAGACATTGATGAGAAATTCAAAAAGTACATTGGTGCAAACACAAAAATAGTTCCATTAATACTTAATCAAAATCAAATATTTAAACTCGACGACTACTTGCTCACGATAAAAATATTCCCACTTTCGACGTCGGCATGCTGTATTGACAGTGAAATTCTTCGAGAAGGCATAATTGACGTAACAAAACGAGGCGAACCGCACGAGTTTGCTAATTTATTGCGGGAGGAAAAGGAAAAGCGTACTGCGAGCAAGAAAACAGAGACGTCAAAAATTGTAAATTTAGAAAAACATAATGAAATTGTCGAACGCTTTGCCAAAGAAATTCATGCTGCGACAAATAAATTTCGTGTAATGAACATTGAACAGAACAATGGCATAATATCTGGGCCGCCACATTCAGGGAAAAAAACTATTTGCAGCGAAATTCAAAAGTGCTTGGAAGCTAGAAATGTGAATGTTATACCTTTCAATTGTGCTCAATACAAGGGAAGAAAAGTTGATTCGATAGTGAAGGACATGAGAGGCATGCTTATGGAGTGTCTTAAAACGGCACCATCTGTTTACATGATTCACAATTTGGATGCACTTTGTACACAACCGCATGACGAACAGCAAACGCAAGAAAGCGAATATCAGCAAAAATTGGCAAACAGCATTCGTCACGTGTTTGAAGAGTTTACTCACGATTACGGACATTTGGTGTCAATCGTTGTCACCACATCCAAATTGTCAAACTTAAGCAAGAGCATTTTTCGCAGCTACGGCAATTATTTATTTAAAAATGTCGTAAAAATTCCCAATCTAGAAGCGACCGATCGTCGTGAGCTATTTAAAAATTTCTTTCACACATCGTCGCATGTGAAAATTGACTCATCACTCGACTGGGAAAAATTTTCGAGAATTACTGAGGGCTACAAAATAGGCGACATTTGCCAATTTGCTGATAGGGCAATATTTTTCGCGATCAAGGAAAACTATAGGAATCCGATTTTAACGGAGGAAATTTTGAAAAAGTCTTTAGCCATCTCTAACCAATTATGCCTTGAGGGAATTAAAACCGAGGCGACTAATGATAACGAAAGCCATTCCGATGAAAATGAAAAAATCCCCGGAATGGACAATGTAATCGAAACCCTGGAGGAAGTTCTTGTGTGGCCAACTAAATTTCCGAAAATTTTTCAAAATTCTCCTCTCCGGAATCAGGCAGGAATTTTACTCTTTGGATTACCAGGATCGGGAAAGGGCTTTATTGTATCACAAATAACAAAACGATGGAATTTAAGATTGATTTCTGTAAAAGGACCCGAATTGCTAGCAAAATATATCGGACAGAGCGAGGAAAATGTTCGCAATCTCTTCGAAAAAGCTAAATCGGCAAAGCCATGTGTTCTTTTCTTCGACGAATTTGAGAGCCTTGCACCGCGAAGAGGTCACGACTCCACTGGTGTAACCGATAGAGTTGTCAATCAACTGCTGACTGAACTTGACGGCGTGAAAAGCTTGGAGGGTGTTTCAATCATATGTGCAACTTCACGGCCCGACCTAATTGACCCTGCTTTACTAAGAAGTGGAAGAATTGATCGTTTGGTCGAGTGTCAACTGCCAAATGCGGCTGAAAGATTAGAAATTTTGAGATTCTTGTCGCGGTCTTTAACCTTTGATTCGAGTGTCAACTTCAAAGCTTTGGCTTCTAAAATGAACGGATTTACAGGAGCCGATATTAAAAGTGTGCTGACGACTGCAAATATGAAAGCCATTGAAAATGAATTGGAACATAATGGTACCGGTAAGTCTATCGAGCTAGTGGAAATAAAGCAATCGCATTTAGAGGAGTCTCTCGCCAACACGAGACCATCACTCACAAAACAGGACGTAGAAAAGTATCAAGTGCTTTACGATAAGTTTAAGAACAAGAAGTCGGTGACAGTTGAAACGCCACAGCGAGTGAGCTTAGCT
Protein: 1144 (aa)
MFARNFAVKYKPIKSNFVVYVSWSTAIQATNPFEEEEIGINSQLAELCGLKEGTNVSCSVIQNTSPVRSISISLSDEDYKVAECSLDRIQYDLLDQVCVVGRYQPIVIWMNKSIAINAIVDNLSPSFNYGRIQRDTQISINRKMTPDFLRKKKPNDADDSSDATKIKRMSAIERSETVDLSSMPHLRRNNSFIDSRKFLEPPSGGIGSVNDVSSRRTSNGWSDSMYNGERTSKKPPPALSPRSSIKRTKDSSENGRNSLTNGDTIKRNSLTPSASLSNMKSLNEKRDSAEKDFGPISSSLSSSNIRRVQEKSNKFLEQLSNQESPARKLLNSASASSINLPQALTAPTPSVVKTETNQNHKLALEDIKKALLRETQKRHFMKVRIVSDKKRLEKFMQINDVYISKSSSVNINQIHKVRTREEKEYHVRIKCNDSAPEQTIEIHPILAKVLNIEQGYRAELFETKLVCNCIENLEIIPHSDISENNFGVQIAKDIDEKFKKYIGANTKIVPLILNQNQIFKLDDYLLTIKIFPLSTSACCIDSEILREGIIDVTKRGEPHEFANLLREEKEKRTASKKTETSKIVNLEKHNEIVERFAKEIHAATNKFRVMNIEQNNGIISGPPHSGKKTICSEIQKCLEARNVNVIPFNCAQYKGRKVDSIVKDMRGMLMECLKTAPSVYMIHNLDALCTQPHDEQQTQESEYQQKLANSIRHVFEEFTHDYGHLVSIVVTTSKLSNLSKSIFRSYGNYLFKNVVKIPNLEATDRRELFKNFFHTSSHVKIDSSLDWEKFSRITEGYKIGDICQFADRAIFFAIKENYRNPILTEEILKKSLAISNQLCLEGIKTEATNDNESHSDENEKIPGMDNVIETLEEVLVWPTKFPKIFQNSPLRNQAGILLFGLPGSGKGFIVSQITKRWNLRLISVKGPELLAKYIGQSEENVRNLFEKAKSAKPCVLFFDEFESLAPRRGHDSTGVTDRVVNQLLTELDGVKSLEGVSIICATSRPDLIDPALLRSGRIDRLVECQLPNAAERLEILRFLSRSLTFDSSVNFKALASKMNGFTGADIKSVLTTANMKAIENELEHNGTGKSIELVEIKQSHLEESLANTRPSLTKQDVEKYQVLYDKFKNKKSVTVETPQRVSLA
| Type | Start | End | Length |
| CDS |
44026 |
44079 |
54 |
| CDS |
44368 |
44674 |
307 |
| CDS |
44786 |
47856 |
3071 |
| intron |
44080 |
44367 |
288 |
| intron |
44675 |
44785 |
111 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001868111 |
peroxisome biogenesis factor 1 [Culex quinquefasciatus] gb|EDS26100.1| peroxisome biogenesis factor 1 [Culex quinquefasciatus] |
1e-175 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003960 |
ATPase, AAA-type, conserved site |
|
| InterPro |
IPR009010 |
Aspartate decarboxylase-like fold |
|
| InterPro |
IPR025653 |
Peroxisome biogenesis factor 1 |
|
| InterPro |
IPR015342 |
Peroxisome biogenesis factor 1, N-terminal |
|
| Gene Ontology(BP) |
GO:0007031 |
peroxisome organization |
|
| Gene Ontology(BP) |
GO:0006625 |
protein targeting to peroxisome |
|
| Gene Ontology(CC) |
GO:0005777 |
peroxisome |
|
| Gene Ontology(CC) |
GO:0005778 |
peroxisomal membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0042623 |
ATPase activity, coupled |
|
| Pfam |
PF13207.1 |
AAA domain |
4.6e-07 |
| Pfam |
PF08433.5 |
Chromatin associated protein KTI12 |
0.015 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.019 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
2.8e-48 |
| Pfam |
PF13238.1 |
AAA domain |
0.03 |
| Pfam |
PF13173.1 |
AAA domain |
1e-05 |
| Pfam |
PF09262.6 |
Peroxisome biogenesis factor 1, N-terminal |
4.4e-08 |
| Pfam |
PF09336.5 |
Vps4 C terminal oligomerisation domain |
0.004 |
| Pfam |
PF03266.10 |
NTPase |
0.0039 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0013563 |
| P. vanderplanki |
Pv.17434 |
| S. invicta |
SI2.2.0_07068 |
| H. sapiens |
ENSP00000394413 |
| T. castaneum |
TC014648 |
| N. vitripennis |
NV16542-PA |
| H. sapiens |
ENSP00000248633 |
| B. mori |
BGIBMGA003776-TA |
| A. mellifera |
GB17159-PA |
| H. sapiens |
ENSP00000410438 |
| P. humanus |
PHUM136080-PA |
| B. mori |
BGIBMGA003775-TA |
| H. melpomene |
HMEL013300-PA |
| C. quinquefasciatus |
CPIJ017662 |
| A. aegypti |
AAEL000895 |
| A. gambiae |
AGAP010924 |
| D. plexippus |
DPOGS210896PA |