MidgeBase gene description page [Pn.00970]
Outline
| Gene ID | Pn.00970 |
| Type | Protein coding gene |
| Scaffold | PnScaf971 |
| Start | 41299 |
| End | 43635 |
| Direction | - |
Sequence
Transcript: 2004 (bp)
ATGAGCAAACTTTCAAACGAGAAAATTTGTATGATTTGTGGTGACAAGTCGCTCGGTTTTAACTTTAACGTGATAAGTTGCGAAAGCTGCAAGGCATTCTTCCGACGGAATGCCATTTCAAACAAGAAATTTACATGTCCGTTCTCAAACGCATGTGAAATAACGGTGATAACGAGGAGATTTTGCCAAAAATGCCGACTCGAAAAGTGTTTCAAGGTCGGCATGAAAAAAGAGTATATCATGTCCGAGGAGGATAAGGAGTTGAAACGAATGAAGATTGAGCAAAATCGGAGCAAGAGGAAAATAAAGGAGCCAACCGAGAGAAGCAGCGAAGAGAAACCGTTAAAATTGACGAGGATAAAAGAAGAGGAATGGTCACCGATTTCTGCACACTCGGTACAGTCGCCAGCGAATAATAAATCGGACGAGTCGGACGACCAATCCATCTCTCTCGAGCGGCTAAAAATATCGTCAGAGTCATCCGTGGCGGAAATTGTCAGTGCTATAACAGAAGTTCCTAAAGAATCTAGTCAAATAATACAAAACGTGATGAAGACCCAAAACGAGGCGCTAAGCGTGATGAGTCGAATCATCAATGAGCCCAATCAGGCGCTGTTGCTAATTTCGCATCTCATCAAAAATCCTAGTGACGGGATGCTGATAATATCAAAAATGATGTCACAATCCCCACTAGATGCGCTGTCAGTTTTCACACAATTCATGAGCTCGCCCTTCGATGCACTTCAAATTATTTTTAAAGTAATTTCTTCGCCCAAAGACGTTCAGTTATTTATGAAGGAACTAACCAAATCGCCGCAGAATGCTTTGGACATTATGAGCAAATTTATGACCACACCAACCGAAGCCTTGCAGACCATCGGTAAATTGTTCGCCGATAATCTGATGGAATCAAACAGTGGCAGCAATTGTAGCAGCTACACCAATGAAACAATCAAATCAATGCTGGGCGACAGTCCTTATTCAGTTGTTGCGCCCACTGCTTCGCCGTCACCTTCGTCCATTCCACAAACGACAGTCAGTTCTCCATCGAGCTTCTTCCAGGATTCCGATTCCAATAACAACGACTATCAACAAATGACAACAACAATATTGAGAGAAATTGCTTACGACATATCCGGAGGAAAGCAAACAACGGCGACAATGTCATTGAAGGGAAATTCAATTGATTCAATAATAAATGAAGCGATAAAATTAGAATATAATACGCCTCAGATGGTCGCACAAATGCAAAATCACAATCGCGAATTGAATGATGTGGAAATCATAAAAATTCAAGAGCTCCTCGATGCGAATTGTGCGCTCTATGCCCCAATCGAGGAGGATCAGTTATCGTTTCTTGGACTTGGCGACGACTTATCAATTAAGGCTGAGGGCGGCCAATTCATTGATCCGATTTTATTGAAAGTTGTGAATTTAACGGCCGTTGCAATTCGTCGACTAATAAAAATGTCAAAGAAAATCTCCGGCTTCAGGAAGATGTGCCAAGAGGATCAGATTGCTCTACTGAAGGGAGGCTGCACAGAGATGATGATACTGAGATCAGTCATGCAATACGATGCAGACCGTGCACTTTGGAAGATTCCCTCGACCAACACCACAAACCTCAAGGCCGACATTCTGAAGCTCTGTCCGAAGGGAAACATCTACGAGGAGCACGAAAATTTCATTAAAACATTTGATGTCAAACTACGTACGGATGAGAGAATAGTGCTTATTTTGTGCGCTATCACGTTGTTCTGTCCCGAACGGTCAAGTGTCATTCACAAAGATGTTATCAAGATGGAACAGAATTCATATTATTTTCTTTTGCGACGCTATCTCGAGAGCGTATATGAAGGTTGTGAGGCTCGTTCGATTTTCTTACAGTTGCTGAGAAAAATTAATGAGGTTCGCAGATTAAACGAAGAAGTGATTTCAGTGTATTTGGACGTGAACCCGGGTCAGGTGGAGCCGTTGCTTAGAGAAATTTTTGATTTAAAAGCC
Protein: 668 (aa)
MSKLSNEKICMICGDKSLGFNFNVISCESCKAFFRRNAISNKKFTCPFSNACEITVITRRFCQKCRLEKCFKVGMKKEYIMSEEDKELKRMKIEQNRSKRKIKEPTERSSEEKPLKLTRIKEEEWSPISAHSVQSPANNKSDESDDQSISLERLKISSESSVAEIVSAITEVPKESSQIIQNVMKTQNEALSVMSRIINEPNQALLLISHLIKNPSDGMLIISKMMSQSPLDALSVFTQFMSSPFDALQIIFKVISSPKDVQLFMKELTKSPQNALDIMSKFMTTPTEALQTIGKLFADNLMESNSGSNCSSYTNETIKSMLGDSPYSVVAPTASPSPSSIPQTTVSSPSSFFQDSDSNNNDYQQMTTTILREIAYDISGGKQTTATMSLKGNSIDSIINEAIKLEYNTPQMVAQMQNHNRELNDVEIIKIQELLDANCALYAPIEEDQLSFLGLGDDLSIKAEGGQFIDPILLKVVNLTAVAIRRLIKMSKKISGFRKMCQEDQIALLKGGCTEMMILRSVMQYDADRALWKIPSTNTTNLKADILKLCPKGNIYEEHENFIKTFDVKLRTDERIVLILCAITLFCPERSSVIHKDVIKMEQNSYYFLLRRYLESVYEGCEARSIFLQLLRKINEVRRLNEEVISVYLDVNPGQVEPLLREIFDLKA
| Type | Start | End | Length |
| CDS |
41302 |
41378 |
77 |
| CDS |
41449 |
41566 |
118 |
| CDS |
41683 |
41961 |
279 |
| CDS |
42026 |
43522 |
1497 |
| CDS |
43603 |
43635 |
33 |
| intron |
41379 |
41448 |
70 |
| intron |
41567 |
41682 |
116 |
| intron |
41962 |
42025 |
64 |
| intron |
43523 |
43602 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001866050 |
nuclear receptor nhr-48 [Culex quinquefasciatus] gb|EDS42670.1| nuclear receptor nhr-48 [Culex quinquefasciatus] |
1e-177 |
| InterPro |
IPR013088 |
Zinc finger, NHR/GATA-type |
|
| InterPro |
IPR008946 |
Nuclear hormone receptor, ligand-binding |
|
| InterPro |
IPR000536 |
Nuclear hormone receptor, ligand-binding, core |
|
| InterPro |
IPR001628 |
Zinc finger, nuclear hormone receptor-type |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(BP) |
GO:0043401 |
steroid hormone mediated signaling pathway |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003707 |
steroid hormone receptor activity |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF00105.13 |
Zinc finger, C4 type (two domains) |
1.4e-22 |
| Pfam |
PF00104.25 |
Ligand-binding domain of nuclear hormone receptor |
1.4e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA010783-TA |
| H. sapiens |
ENSP00000450105 |
| N. vitripennis |
NV10187-PA |
| A. mellifera |
GB10331-PA |
| A. aegypti |
AAEL007202 |
| C. quinquefasciatus |
CPIJ016038 |
| D. plexippus |
DPOGS200543PA |
| P. humanus |
PHUM460980-PA |
| S. invicta |
SI2.2.0_13736 |
| H. melpomene |
HMEL016865-PA |
| P. vanderplanki |
Pv.17435 |
| A. gambiae |
AGAP004224 |
| B. mori |
BGIBMGA010782-TA |
| T. castaneum |
TC010645 |
| H. sapiens |
ENSP00000449561 |
| D. melanogaster |
FBgn0015240 |