MidgeBase gene description page [Pn.00944]
Outline
| Gene ID | Pn.00944 |
| Type | Protein coding gene |
| Scaffold | PnScaf946 |
| Start | 24278 |
| End | 25542 |
| Direction | + |
Sequence
Transcript: 801 (bp)
ATGGCGGTGTTCTTGGGCTTGCTCGTGCGAACTTATCGGAAATTTCTGCGAGATTTCGAGGATCCTCGCGTGGACGATTATCCGCTTATGTCGTCGCCGCTGCCGACAGTCGCGATTATCGCTGGCTATATTTATTTTGTGAAAAGCCTCGGACCGTCATTAATGAGGGACAGAAAGGCCTTCGAGTTGAGACCGCTGATTGCCGCTTATAATCTTTTTCAAGTCGCCGCCAATCTCATCAATTGCCTTCACCAGATGCTCGGCAAGGACATGAACATAAACTGGCTGTGCATGCTCCCACCGTGGAACGACACCTCGGACACTTACCGGATCATCACCAAGTGCAGTTATTTTTATTTCATTCTCAAGATCATCGACCTCCTCGATACGGTGTTTTTCGTGCTGCGCAAGAAGGAGCGGCAAATCACCTTCCTACACTGCTACCACCATGCCGGCATGCTGGCGCTCGTGTACGTCCATCTGAAGTTCTTTAGTGGCGGAGGCCACTCGCTTCTGCTCGGCATCCTCAACTCGTTCGTTCACTGCGTCATGTATTTTTACTATTTTACGACCTCGTGCAGTCTCAAGGTTGGCAGCGAGGACAGCTGGAAGAAGCGCATCACGCAGGTGCAGATGATCCAATTTTTGCTCATCGCACTGCACAACATCGTTCCGCTCTTCACCGACTGCAAATTCATAAAAATTGGGCACATCTTCCTGGTCATGCAGAACATTTTCATGCTCGCGCTCTTCTCCGACTTTTACGTGAAGACCTACGTGAGAAAGAAAGCGGCGAAAGAC
Protein: 267 (aa)
MAVFLGLLVRTYRKFLRDFEDPRVDDYPLMSSPLPTVAIIAGYIYFVKSLGPSLMRDRKAFELRPLIAAYNLFQVAANLINCLHQMLGKDMNINWLCMLPPWNDTSDTYRIITKCSYFYFILKIIDLLDTVFFVLRKKERQITFLHCYHHAGMLALVYVHLKFFSGGGHSLLLGILNSFVHCVMYFYYFTTSCSLKVGSEDSWKKRITQVQMIQFLLIALHNIVPLFTDCKFIKIGHIFLVMQNIFMLALFSDFYVKTYVRKKAAKD
| Type | Start | End | Length |
| CDS |
24278 |
24338 |
61 |
| CDS |
24400 |
24581 |
182 |
| CDS |
24913 |
25305 |
393 |
| CDS |
25375 |
25539 |
165 |
| intron |
24339 |
24399 |
61 |
| intron |
24582 |
24912 |
331 |
| intron |
25306 |
25374 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003435747 |
AGAP013094-PA [Anopheles gambiae str. PEST] gb|EGK97666.1| AGAP013094-PA [Anopheles gambiae str. PEST] |
4e-54 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
6.6e-56 |
| Pfam |
PF01080.12 |
Presenilin |
0.24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17316 |