MidgeBase gene description page [Pn.00943]
Outline
| Gene ID | Pn.00943 |
| Type | Protein coding gene |
| Scaffold | PnScaf946 |
| Start | 17564 |
| End | 23500 |
| Direction | + |
Sequence
Transcript: 1662 (bp)
ATGTTGCTGGCCGATGCGTACGAATTTGCGTTTTACGCGGCGAAAGACCCGCGTGCCGTTGGGCTGCCGTTCACCGAGAGCCCGCCCGTTTCGATGATCGTCCTCGTCGTCGCCTACATTTCGCTCATCAAGTTTGGACCGCGCGCGATGGAAAAGCGGAAGCCGTTCGAGCTGCGGAACGTCATGATCGCCTACAATGCTGTTCAGGTTGTCATCAACACTGCAGCTGCTGTTGCGGCGCTGTATCTATTATTCTGGAGAAATCAATTCAACTTCAAGTGCCATCCTATAGATCGTAGCAACAGCGTAGAATATTTCTTCACCTACGTGTATTTCGTCTTCAAAGTCATCGATCTGCTAGACACAGTGTTTATTGTGCTGCGAAAAAATAACAAACAACTGTCGTTCCTGCACTGCTACCATCACCTAATGATGGCGTGTGCAGTCTACATGGGCATCATGTGGTTTCCGGGCGGCTCGGCCATCCTCCTCGGCGTCCTCAACTCCTTTGTGCACTCCTTCATGTACACGTACTATCTGAGGACTGCGCTCAGCGATGGAAAGCTGAAGCACTCACTGTGGTGGAAGAAGCACATTACACACATTCAGCTGATTCAATTCATCATTCTCACGACGGTTTACACTCGAACGCTCTTCGCAAGCAATTGCAGCTATCCGATGTTCCTGCGATTGATACTGTTCACGCAGAGCATCTTCATGCTGTATCTCTTCTCGAAGTTCTACATCAAAGCATATGTGAAGAAGAAAAGCGGACGAGTTGCATTCGACGGAGCATTCACAAAAAAGAGCAAGAAGCAAAAGCTCTTATTGATTATTTTCTTTCTTTCCTTCTTTCTTTCTCTCTTGACAGATGAAAGAATCAAGGACCTCTTCCTGGTGAGTTCGCCGTGGCCGATGGTGGCCATTGTTGCGGCATATCTCTATTTCGTCAACGGCAGGGGACAGAAATGGATGCAAGACCGGAAGCCTTTTGAGCTCAACGGCATCATTAATATCTACAACATCATGCAAGTTCTGCTGAACTTGTATGTGGGCATCGGGGCTGTATGGGCACTGCTGGCAGTAACGGACTTGAATATCATGTGCATTCCGGAGGCTAGGAAAATGATATCGGAGGAGGGGAAGCGTATCATATACTACTCGCATCTGTATTATCTGATAAAAGTCGTGGATTTGCTCGATACGAAACATAAATCTCTCAAAATCCACAACCAAATGCTTCATGTCACCCTGCAGGTATTCTTCATCCTCCGCAAAAAGAACAACCAGGTGTCGTTTCTGCACATCTACCATCACACCATAATGGTGGTCGGCGTTTATGTTTACATCAAGTTTATGGTGGGCGGCGGCCAGCCCTCGTCGCTCGGCATCATCAATAGCTTTGTGCACGTGGTGATGTATGCCTACTACTTCCTCACGTCCTTCAAGCCCGAGCTGAAGAAGTCGATCTGGTGGAAGAAGCACATCACGCAGCTCCAGATGACGCAGTTCGCGATCCTCATCGTCCACTTCCTCGTGCCGGTGTTCACGGAGTGCGACTTTCCGAAGGGACTGTCAGCGGGCATCGCCTTCCAAAACATCTTCATGTTTGTGCTGTTTGCCGACTTTTACTACAAGGCCTACATAAAGGAGAAGAAGCAG
Protein: 554 (aa)
MLLADAYEFAFYAAKDPRAVGLPFTESPPVSMIVLVVAYISLIKFGPRAMEKRKPFELRNVMIAYNAVQVVINTAAAVAALYLLFWRNQFNFKCHPIDRSNSVEYFFTYVYFVFKVIDLLDTVFIVLRKNNKQLSFLHCYHHLMMACAVYMGIMWFPGGSAILLGVLNSFVHSFMYTYYLRTALSDGKLKHSLWWKKHITHIQLIQFIILTTVYTRTLFASNCSYPMFLRLILFTQSIFMLYLFSKFYIKAYVKKKSGRVAFDGAFTKKSKKQKLLLIIFFLSFFLSLLTDERIKDLFLVSSPWPMVAIVAAYLYFVNGRGQKWMQDRKPFELNGIINIYNIMQVLLNLYVGIGAVWALLAVTDLNIMCIPEARKMISEEGKRIIYYSHLYYLIKVVDLLDTKHKSLKIHNQMLHVTLQVFFILRKKNNQVSFLHIYHHTIMVVGVYVYIKFMVGGGQPSSLGIINSFVHVVMYAYYFLTSFKPELKKSIWWKKHITQLQMTQFAILIVHFLVPVFTECDFPKGLSAGIAFQNIFMFVLFADFYYKAYIKEKKQ
| Type | Start | End | Length |
| CDS |
17564 |
17609 |
46 |
| CDS |
17670 |
17860 |
191 |
| CDS |
19174 |
19302 |
129 |
| CDS |
19370 |
19467 |
98 |
| CDS |
19523 |
19670 |
148 |
| CDS |
20557 |
20710 |
154 |
| CDS |
21191 |
21216 |
26 |
| CDS |
22277 |
22546 |
270 |
| CDS |
22606 |
22749 |
144 |
| CDS |
23042 |
23497 |
456 |
| intron |
17610 |
17669 |
60 |
| intron |
17861 |
19173 |
1313 |
| intron |
19303 |
19369 |
67 |
| intron |
19468 |
19522 |
55 |
| intron |
19671 |
20556 |
886 |
| intron |
20711 |
21190 |
480 |
| intron |
21217 |
22276 |
1060 |
| intron |
22547 |
22605 |
59 |
| intron |
22750 |
23041 |
292 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_975397 |
PREDICTED: similar to elongase, putative [Tribolium castaneum] |
5e-87 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
8.7e-105 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013094 |
| C. quinquefasciatus |
CPIJ013818 |
| A. aegypti |
AAEL000188 |
| P. vanderplanki |
Pv.17315 |
| D. melanogaster |
FBgn0039030 |