MidgeBase gene description page [Pn.00909]
Outline
| Gene ID | Pn.00909 |
| Type | Protein coding gene |
| Scaffold | PnScaf896 |
| Start | 37509 |
| End | 46718 |
| Direction | + |
Sequence
Transcript: 3888 (bp)
ATGCTCCTTAATCTCGCATGCCGGCAAAGCCTGCAATATGCGGGCAATGTGCAGAGAAATCACAAGTTCATGTCGATAGCGCAGTCAATATCGCAGCAGAGCGAAGAATGCACCTATGAGACCCTCGACGAGTCGCTGCTCATGACGCTGTCGAATGAGCAAAATATCTCTAGTACTAAGCTATTAGCATGTAGATTTAAGAGACTACCAAAAACCTTCCCACTAGCATCGGCTAAGAATGTAGAAAACTTAAAAATCGTATGTGATAAATTATTCGTTGCCAACAGCGAGGGCAAGACGTCGAATTTTTTCGACAACTTTGAGAATCTGAAGAATTTATTTCTCGAAAATTGTGATGGAAATTTTCTGCGGAATTTCAATTCGCTAAAGTCACTCAATGGCCTCACGATACGGAATTATCGAACGTTCTGGGGACGCTACGATGACATAATGGACGATTTTGGATCGTCGAATGATTACGAGCCGTTCGATAATTTGCAGAACATCAAGAGTCTGGACATTAGTGCCAACGGCATTCAGGAGTTGCACCGCAACTTCTTTTGTGATTTTCATAAACTAAATTTCCTCAATTTGTCATCGAATCAAATTTATAATCTAACAAACTTTCAATTCTCGTCAACGCCGATCAAGAACTGTGTGTTTTCCATGTCGTATCTGATACTGACGAGCAATCAGCTCAACTTCCTTCCATTTTCATTTTTCTCGAATTTCGTCAATCTCAAAGTGCTGCGGCTCAATCGCAACTCGATTTCGTTTATCGAGAACTTTGTCTTTTCGAATCTCAAGCAGCTCGACATGCTCGACCTGAGCGAGAATAAAATTCAGAGCATCCAGCCGGAATTGTTTGACAATCTACAGAACCTGCGAACGCTCAATTTGGAGAAGAACTCAATGAAGATTCTGCCTCCCGAGTTGCTCGCAAATCTGAAGAAGCTCGAGCTTCTGAACTTGTCATCGAATTTCCTCTCGTCCAATTGGATTAATTTTCTGTCGTTCAAGAACTTGTTCAACTTACGCCTCCTCGACTTGTCCTACAACAAGCTCACGAGTCTGGAGAATTCAATTTTCGCCGACTTGGCCGCCCTCGAGGTGCTCGACCTCAAGAACAATCTCATCGAGAGCGTCGCGATGAACACATTCGCGAATTTGACGTCGCTCTCGTCCCTCGTCATGTCGCATAACTTCATAAAGAATGTCAATTTTTCTCTCAATTCCTTAACGAATCTCAACGTGCTGTCGCTCGACTTTAACGAAATTTACTCGGTGGAAAAGCACTTGGTGTCGAACTCGATGAAACTCGTCGACCTCCATCTCAACAACAACAAGTTCTTTCGCGTGCCGAGCTTCGTCGAGAATTTTCAATTTCTCAAGACGCTCGATCTCGGCGAGAATTTCATCAAGAATTTGTCGGATTTGGGAAATCTTCCGAATCTAAAATACCTTTACGGTCTACGGCTGACGGAGAATCAGATCGAGACGCTCGAGCGGAATCAGTTTGCGCACTTGAAGAACCTCCAGATCGTTAATTTATCGAAAAATCGAATTCGTCACATTGATCGCGAGACGTTCGCTTCTAATGAGCTGCTCCAGGCGATTCGCTTGGATGGAAATTCCATCAAGAACATTGACTACATGTTCGAGAACCTCACACAGCTCGTCTTCCTCAACATCTCGGAGAACGCTCTCGAGGTGTTTGACTACGAGAACTTTCCCAAAAACCTCCAATTCCTCGACATCTCAAAGAATCAGATCAATGTGATTAAGAATCCGAATGAGATCTCGCAGAACCTCAAGACACTCAATCTCAATTACAATCACTTAACCGAAATTTCGGCCTTTGTGTTGCCGCGCAATCTCGAAGATCTCTATCTGCAGTCGAATCTTATTGAGAAAATTTCGCCATACACGTTCATCAAGAAGTCATTCCTCAAGACGGTCGACTTGAAGCACAACAAGATTGCGCATCTCAACGAGAATGCGCTTCGCATCTCGTCCACGAAGAGCGACGAAAAGTTGCCGGAATTTCATCTCGCCGGCAATCCGCTCGTGTGTGATTGTCATTTGAAATGGATGTGGCAGGACAATGTCGGCGGCGGCGGCGGCAACAATAATGTAAATAATGCCATTTCGTTCGGCAACATCGAGAATCCCGAGCAATTTCCCTATCTGCTCGAGGAGCACGTCAATGCGGACGATGCGCGAAATTATCCGTCGTATGCCGCGCAGAAAATGGACGATTTCGATAACAACTTTCCGCCCATTATGGAGCAGCACGGCGGCGATGGCTACGGTGGCAGGCCGTTTAATGCGCCGAGCGGGCTTCGCACGCAACCCAAAATCGTCGATTTCGATCAGATGACGTGCTCGTTCGGCAGCGGCAGCGCCAATAAAATTCCAATTCGTAAATTAAATCCGAATCTCTTTCTCTGCAAGTACACGAACGTTTGCATGAAGAGTTGCCAGTGCTGCGAGAACTTTTCGTGCGATTGCCAACAAAAGTGCCCCGACCGATGCAACTGCTATCACAACACAAATTGGGACGTAAATTTCGTAAACTGCTCCTCCGCCAACTACTCCAAGTCGCTGCCGAGTCTCATTCCGATGGAGGCCACGCACCTCCATCTCGATGGCAATCACTTCGAGACCATCAAAGACTTTTCCTTCATCGGTCGGCGCGCACTGCGAATTCTCTATTTAAATCACTCGCACATCCAGCAGCTGACGAATCGAACGTTCTTCGGCCTCAAACACCTCGAGCTGCTGAGCCTGAAGAGCAACGAGCTCACGCAGCTCAATGGCGACGAGTTCAACGAGCTCGAGAGCGTAAAATTTTTGTTCCTGCAGTACAATCACATCAAGTTCATCGAGCGTAAAACTTTCGTGCAGCTGCGTCAGCTGCAAGTGCTCAAGCTCAATGGCAACATGCTAATGACTTTTAATCTGCAGTTCCTGCCGCAGAACGTCGTCCAACTCGACCTCAGCGAGAATCTCCTCGAGTGCGACTGCGAGCTCATCAAGAGCCTCAAAGTGTACGCGGCCATCGAGTTCCGCGACACTCTCAAGTGCCATCCCAATCAGACCTACCACGAGTACTTTTTCGTCATGAACGAGACGAACTTTTGCAATGAGAAGCTGGCACTCGAGAATATCTTCTTTTTCGAGAAAAATCTGCCGATATTTCTCATTGTCTTCCTTTGCTGTCTCTTCCTCATCATTCTCATTTTCATCTTCAATCAGCGCATCATGTTTTGCTGCTACAAAAAGTTCAATTTGCGCTTTTTCAAGAAGCGCAACGACAAGAACAAGTTCTTCGATGGGTTCCTAGTGTTCAGCAAGAAGGACGAGAATTTTCTCATCGATGAGTTCCTTAAGCACTTCGAGACGGAAGGAAATTATTACAAGTTCTTCCTCTTCTTCCACGACTTTTCCATCTTCAATGAGCAAATATTGAAGAACAGCGAAAACTCGCAGAAAATCATTCTCTTTCTGTCCGAGAACTTCCTCAAAAATGAGTGGAAGAAAATTGAGTTTAAGAAAATCTTCTACGAGATTCTCAAGACAAAGAAGCGAAAGAAGCTCATTATTGTGTTCCTCGATAATTTCGACAATAAGAATTTCGATCCCGAGCTCAAGCTCATCCTCAAGACGAACTTCGTCTTGCGATGGAGCGAGAAGCTGTTTTGGGAAAAGTTCAAGTTCTTCCTGCCGAGTCTCAATCGGTCAAATGGCCAACAGCCGCAGCAACAACAGCTGCAATCGTCACCTCACCACGACCCAGAAAATTTCTGTCAAAATTTTCACCTCAATAATCTCCACAATAATCACCATCACCCGAGTCCTCAACGTAATCTCACGTCAATTCACATA
Protein: 1296 (aa)
MLLNLACRQSLQYAGNVQRNHKFMSIAQSISQQSEECTYETLDESLLMTLSNEQNISSTKLLACRFKRLPKTFPLASAKNVENLKIVCDKLFVANSEGKTSNFFDNFENLKNLFLENCDGNFLRNFNSLKSLNGLTIRNYRTFWGRYDDIMDDFGSSNDYEPFDNLQNIKSLDISANGIQELHRNFFCDFHKLNFLNLSSNQIYNLTNFQFSSTPIKNCVFSMSYLILTSNQLNFLPFSFFSNFVNLKVLRLNRNSISFIENFVFSNLKQLDMLDLSENKIQSIQPELFDNLQNLRTLNLEKNSMKILPPELLANLKKLELLNLSSNFLSSNWINFLSFKNLFNLRLLDLSYNKLTSLENSIFADLAALEVLDLKNNLIESVAMNTFANLTSLSSLVMSHNFIKNVNFSLNSLTNLNVLSLDFNEIYSVEKHLVSNSMKLVDLHLNNNKFFRVPSFVENFQFLKTLDLGENFIKNLSDLGNLPNLKYLYGLRLTENQIETLERNQFAHLKNLQIVNLSKNRIRHIDRETFASNELLQAIRLDGNSIKNIDYMFENLTQLVFLNISENALEVFDYENFPKNLQFLDISKNQINVIKNPNEISQNLKTLNLNYNHLTEISAFVLPRNLEDLYLQSNLIEKISPYTFIKKSFLKTVDLKHNKIAHLNENALRISSTKSDEKLPEFHLAGNPLVCDCHLKWMWQDNVGGGGGNNNVNNAISFGNIENPEQFPYLLEEHVNADDARNYPSYAAQKMDDFDNNFPPIMEQHGGDGYGGRPFNAPSGLRTQPKIVDFDQMTCSFGSGSANKIPIRKLNPNLFLCKYTNVCMKSCQCCENFSCDCQQKCPDRCNCYHNTNWDVNFVNCSSANYSKSLPSLIPMEATHLHLDGNHFETIKDFSFIGRRALRILYLNHSHIQQLTNRTFFGLKHLELLSLKSNELTQLNGDEFNELESVKFLFLQYNHIKFIERKTFVQLRQLQVLKLNGNMLMTFNLQFLPQNVVQLDLSENLLECDCELIKSLKVYAAIEFRDTLKCHPNQTYHEYFFVMNETNFCNEKLALENIFFFEKNLPIFLIVFLCCLFLIILIFIFNQRIMFCCYKKFNLRFFKKRNDKNKFFDGFLVFSKKDENFLIDEFLKHFETEGNYYKFFLFFHDFSIFNEQILKNSENSQKIILFLSENFLKNEWKKIEFKKIFYEILKTKKRKKLIIVFLDNFDNKNFDPELKLILKTNFVLRWSEKLFWEKFKFFLPSLNRSNGQQPQQQQLQSSPHHDPENFCQNFHLNNLHNNHHHPSPQRNLTSIHI
| Type | Start | End | Length |
| CDS |
37509 |
37565 |
57 |
| CDS |
42885 |
46715 |
3831 |
| intron |
37566 |
42884 |
5319 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001870087 |
vasorin [Culex quinquefasciatus] gb|EDS31540.1| vasorin [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| InterPro |
IPR000157 |
Toll/interleukin-1 receptor homology (TIR) domain |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
1.5e-77 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
6.2e-59 |
| Pfam |
PF13676.1 |
TIR domain |
0.00029 |
| Pfam |
PF01582.15 |
TIR domain |
6.8e-13 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
7e-11 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
3.3e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.14127 |
| P. vanderplanki |
Pv.12435 |