MidgeBase gene description page [Pn.00899]
Outline
| Gene ID | Pn.00899 |
| Type | Protein coding gene |
| Scaffold | PnScaf889 |
| Start | 4455 |
| End | 5558 |
| Direction | - |
Sequence
Transcript: 1101 (bp)
ATGAAACGTCTCGTGGCGTTGACTTTGCTCAGCCTCATTGGCTCGAGCTTTGCGTGCACAATTACAAAGGTCGGCGGAACGCACGCACCGTCGCAATTCTGTGCCGGAGATTTAATTTTTGAGGACAATTTCAATACTTTGGACACGAGCAAATGGATGTTCGATAACACTTTGGGAGGCGGCGGCAATTGGGAGTTTCAGTGGTACCCGGGCAACTCGAACATCAACTTCCAGATCAGAAATGGCGTCGCCCATTTCATTCCAAGCATGACAAATGACTACTTTGGCGACCCGACCTTTATCGAGTGGGGCCGCATCACGATTCCGCCAAGCGAATGCACGCAGGCCCAGTGGTACGGCTGCGACAGAACCGGATCGAGAGACAACGTCCTGAACCCAACGAGAAGCGCCAGAATCGACTCGAGAAACTCGTTTTCGTTCACTCATGGCGTTATGGAGATCCGCGCAAAAATGCCACTCGGAGACTGGCTGTGGCCGGCGTTGTGGCTGCTGCCGAAGCATCTCGTTTATGGCGAATGGCCTCGCTCGGGCGAGATCGACTTGATGGAGATGAGAGGTAATTACAACCTTTGGGACGGAACGACGCACGTCGGTGTTGAGCAAATCGGCTCGACCATGCATTTCGGCCCCAACTGGAACGTCAACGGATGGCCAACGGCTCACTACACGCGCAACCAACGGCCCGGCTTCGACCTCAACTTCCACGTTTACAAGCTCGTGTGGACCGACCGCGATATCCAGTTCTACGTCGATAACAATCACATCGGAACTGTCGCCGCGGGCACTGGCTTCTGGGATCGCGGTGGATTCCAAAACTCGGGCTACCAAAACCCGTGGACCGGCGGTACCGTCATGGCGCCTTTCGATCAAGAATTCTACATCATCATGAACTTGGCCGTCGGCGGCACCAACTACTTCCCCGACCACTTCGTGAACCTGCCGAATCCGAAGCCATGGCGCAATGACTCACCACGCGCATCCTCCGACTTCTGGGAGCACCGACACTGGTGGCAGCCGACCTGGGGACTCGGAACCGACCAATCGCATATGCAAGTCGACTATGTCCGCGTGTGGGCCATC
Protein: 367 (aa)
MKRLVALTLLSLIGSSFACTITKVGGTHAPSQFCAGDLIFEDNFNTLDTSKWMFDNTLGGGGNWEFQWYPGNSNINFQIRNGVAHFIPSMTNDYFGDPTFIEWGRITIPPSECTQAQWYGCDRTGSRDNVLNPTRSARIDSRNSFSFTHGVMEIRAKMPLGDWLWPALWLLPKHLVYGEWPRSGEIDLMEMRGNYNLWDGTTHVGVEQIGSTMHFGPNWNVNGWPTAHYTRNQRPGFDLNFHVYKLVWTDRDIQFYVDNNHIGTVAAGTGFWDRGGFQNSGYQNPWTGGTVMAPFDQEFYIIMNLAVGGTNYFPDHFVNLPNPKPWRNDSPRASSDFWEHRHWWQPTWGLGTDQSHMQVDYVRVWAI
| Type | Start | End | Length |
| CDS |
4458 |
5558 |
1101 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACI32836 |
beta-1,3-glucanase [Ostrinia nubilalis] |
1e-103 |
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR000757 |
Glycoside hydrolase, family 16 |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Pfam |
PF00722.16 |
Glycosyl hydrolases family 16 |
1.5e-18 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17205 |
| P. vanderplanki |
Pv.01447 |