MidgeBase gene description page [Pn.00886]
Outline
| Gene ID | Pn.00886 |
| Type | Protein coding gene |
| Scaffold | PnScaf874 |
| Start | 23906 |
| End | 30278 |
| Direction | + |
Sequence
Transcript: 2385 (bp)
ATGGATTTAACCTCCAAATTCTCGTCAATGTATATCAGAAACGATTCAAGATATGGCTCGGGTGCGGGAAGTTCAAATGGCTTCAGCAATGGTGCGTCGTCGAGATCCAATGGAAGTCGAATGAACGACGGAGTAGCGAGACGAAACGACCGATTCAACGGACGCGTCGAGAAGACTGGATACGGCTTCGGAGGAAGTGGTCGAAGCAAGAGCAGCTTGGACGAGCAAGTTTTGAAGCGCATCAACTGGACCCAGGAAACTCTTGCACCTCTGCGCAAAAACTTTTACAAAGCGTCACCGAGCGTTTTGGAGCGTGCACGCTCCGAGGTTGATAACTTCCTGTTGAAGAACGAGGTCACCGTTCACGGTAGAGATCATCCGGCACCGGTTCTTGAGTTCCAGGAAGTCGGATTTCCATCTTACATCACAAGCGAAATGACGCGTCAAGGCTTCACCACGCCGACCGTTATCCAGTCGTCGAGCTGGCCGATCGCAATGTCGGGTCGCGACTTGGTCGGAATTGCTCAGACAGGCAGCGGAAAGACACTGGCCTACATTCTGCCAGCATTGGTACACATCACCTACCAAGAGAAGCTGCAACGCGGGGACGGCCCAATTGCTCTCGTTCTCGCCCCAACAAGAGAACTTGCCCAACAAATTCAAGCTGTCGCGACAGACTTTGGCAAGCGCATCGGAATCCGCAACACGTGCGTCTTTGGCGGAGCACCGAAGAGACCACAACAAAATGACTTGCAGCGCGGCAGCGAGATCGTCATTGCCACACCCGGCCGTCTGATCGACTTCCTGCAAGGCGAAGTGACTAATCTCAAGCGATGCTCGTACCTCGTGCTCGATGAAGCGGATCGTATGCTTGACATGGGTTTCGAACCGCAGATTCGCAAGATTATCGAGCAAATTCGCCCGGACCGTCAAGTCCTGATGTGGAGCGCCACATGGCCGAAGGAGGTCCGTAACCTCGCCGAAGAGTTCTTAAACGACTACGTTCAAATCAACATCGGATCCATGAATTTGTCGGCGAACCAAAACATCCTGCAAATCGTCGACGTCTGCGATGAGGCGGAGAAGGACGACAAGTTGATCAAGCTGCTCTCCGAAATTCAATCGGACCGCGAGAGCAAGACCATCATCTTCGGAGAGACAAAGCGCAAGGTTGACGACATCAGAAACTTCTTAATGAAGCACCGCTTCAGAGCCGTCGCCATTCACGGCGACAAGTCACAGCGCGAGCGTGACTTTGTTCTCGGAAAATTCAGACAAGACCGTCAAAGCATCCTCATTGCTACTGATGTCGCGAGTCGCGGCTTGGACGTGGATGATGTTAAATTTGTCATCAACTACGACTTTCCATCAAACATCGAGGACTACATTCATCGTATTGGCCGTACTGGACGTTCAAACAACAAAGGCACATCATACACATTCTTCACACCAACAAATGCGGCAAAAGTTGATGAGCTCGTCAACATCCTCAACGAAACCAATCAATTTGTGAACCCGGAATTGTACCAGCTGAAAAAGTACTCGCGAGGCGGTGGAAACAATCGCCGTGGCGGCAACAACAACCGCAACTTCGGTGGCGGATTCAAGAGACCATTTGGACAAGGCAACAAACCATCGGGAGGCTATGGCGGAGCACGAACAAACTACGATAATGGCGGCGGCTACAAGAACTACAACAACGGTGCAAGTGGAAGCAAATACATGGGCGTCGGAGAGAGGCATACACGATTCAGCGACAACACTGACCGTACGACGGCTTCTGCCGGCTACAGCAACGTCAACAAGAACTGGCATAGAATCATTTTGGGAACAAAACTTTCTGACAAGATTAGTCGGTTTCACGTCACATCCGCAAAAATTGATGACATTCCCCAGCTGACACAAAACTATCGATCCATCCACTTCGAAGAAGTGATAGATTGGAAAGCCGAGCTGATCAATCAACTGCAAATCATTGGGAGCCAGACGAGCTTGGAAACGCTTCATTTGTTGAATATAAGTGAGCTATTTGAATCGCTCTATGGAACCTTCTATCCAGAGTTTCAGCTGAAGGAATTGGGAATGGTGAATCTGCCCTTTGCAGACTGCTCTCAAATCGTTTCGTTTTTGAAATGCATGCAAGACTCTGTGGTGCACTTGAATCTTGGACTGGAAATGCGAACCGAAGTCAGCGAATACATTTTGCAAAACTTCAGAAAAGTCGTCCACATTCAAATCGATTATGAGTTCTTTCCCAAATCAAAGACATTTTATCGCGAAATGAATGCCAGCAAAAGTTTAAAGTACCTAGATCTTTACGGAAACATGGCATCGAGTCTTCAAATCATGAGGTTTCTCAAGAAAATCCCGGCGTCGAAAAACGTT
Protein: 795 (aa)
MDLTSKFSSMYIRNDSRYGSGAGSSNGFSNGASSRSNGSRMNDGVARRNDRFNGRVEKTGYGFGGSGRSKSSLDEQVLKRINWTQETLAPLRKNFYKASPSVLERARSEVDNFLLKNEVTVHGRDHPAPVLEFQEVGFPSYITSEMTRQGFTTPTVIQSSSWPIAMSGRDLVGIAQTGSGKTLAYILPALVHITYQEKLQRGDGPIALVLAPTRELAQQIQAVATDFGKRIGIRNTCVFGGAPKRPQQNDLQRGSEIVIATPGRLIDFLQGEVTNLKRCSYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRNLAEEFLNDYVQINIGSMNLSANQNILQIVDVCDEAEKDDKLIKLLSEIQSDRESKTIIFGETKRKVDDIRNFLMKHRFRAVAIHGDKSQRERDFVLGKFRQDRQSILIATDVASRGLDVDDVKFVINYDFPSNIEDYIHRIGRTGRSNNKGTSYTFFTPTNAAKVDELVNILNETNQFVNPELYQLKKYSRGGGNNRRGGNNNRNFGGGFKRPFGQGNKPSGGYGGARTNYDNGGGYKNYNNGASGSKYMGVGERHTRFSDNTDRTTASAGYSNVNKNWHRIILGTKLSDKISRFHVTSAKIDDIPQLTQNYRSIHFEEVIDWKAELINQLQIIGSQTSLETLHLLNISELFESLYGTFYPEFQLKELGMVNLPFADCSQIVSFLKCMQDSVVHLNLGLEMRTEVSEYILQNFRKVVHIQIDYEFFPKSKTFYREMNASKSLKYLDLYGNMASSLQIMRFLKKIPASKNV
| Type | Start | End | Length |
| CDS |
23906 |
23909 |
4 |
| CDS |
25127 |
25151 |
25 |
| CDS |
25222 |
26050 |
829 |
| CDS |
26143 |
26611 |
469 |
| CDS |
28199 |
28270 |
72 |
| CDS |
28342 |
28448 |
107 |
| CDS |
28527 |
28818 |
292 |
| CDS |
29596 |
29783 |
188 |
| CDS |
29877 |
30275 |
399 |
| intron |
23910 |
25126 |
1217 |
| intron |
25152 |
25221 |
70 |
| intron |
26051 |
26142 |
92 |
| intron |
26612 |
28198 |
1587 |
| intron |
28271 |
28341 |
71 |
| intron |
28449 |
28526 |
78 |
| intron |
28819 |
29595 |
777 |
| intron |
29784 |
29876 |
93 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001654592 |
DEAD box ATP-dependent RNA helicase [Aedes aegypti] gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] |
0.0 |
| InterPro |
IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
|
| InterPro |
IPR014014 |
RNA helicase, DEAD-box type, Q motif |
|
| InterPro |
IPR000629 |
RNA helicase, ATP-dependent, DEAD-box, conserved site |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0008026 |
ATP-dependent helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF11577.3 |
NF-kappa-B essential modulator NEMO |
0.044 |
| Pfam |
PF10398.4 |
Protein of unknown function (DUF2443) |
0.045 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
1.2e-46 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
1e-25 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.00085 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.12841 |
| Pn.07709 |
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0003261 |
| M. musculus |
ENSMUSG00000055065 |
| S. invicta |
SI2.2.0_09747 |
| A. gambiae |
AGAP003663 |
| H. sapiens |
ENSP00000371046 |
| H. sapiens |
ENSP00000225792 |
| A. aegypti |
AAEL008738 |
| T. castaneum |
TC002367 |
| C. quinquefasciatus |
CPIJ012512 |
| A. mellifera |
GB11852-PA |
| H. sapiens |
ENSP00000459637 |
| A. gambiae |
AGAP005652 |
| A. mellifera |
GB10726-PA |
| A. gambiae |
AGAP004912 |
| A. gambiae |
AGAP005351 |
| A. mellifera |
GB12312-PA |
| C. quinquefasciatus |
CPIJ014935 |
| H. melpomene |
HMEL013855-PA |
| P. vanderplanki |
Pv.13398 |
| A. aegypti |
AAEL002351 |
| H. sapiens |
ENSP00000380033 |
| A. mellifera |
GB16537-PA |
| A. mellifera |
GB15283-PA |
| B. mori |
BGIBMGA011965-TA |
| S. invicta |
SI2.2.0_01003 |
| C. quinquefasciatus |
CPIJ009445 |
| M. musculus |
ENSMUSG00000020719 |
| H. sapiens |
ENSP00000403085 |
| B. mori |
BGIBMGA011754-TA |
| H. sapiens |
ENSP00000463923 |
| D. melanogaster |
FBgn0029979 |
| H. sapiens |
ENSP00000385536 |
| H. melpomene |
HMEL013900-PA |
| N. vitripennis |
NV16388-PA |
| A. aegypti |
AAEL010787 |
| P. vanderplanki |
Pv.00398 |
| D. plexippus |
DPOGS210327PA |
| D. melanogaster |
FBgn0035720 |
| T. castaneum |
TC010324 |
| C. quinquefasciatus |
CPIJ003935 |
| S. invicta |
SI2.2.0_05205 |
| A. aegypti |
AAEL001769 |
| P. humanus |
PHUM565400-PA |
| P. humanus |
PHUM521070-PA |
| N. vitripennis |
NV17584-PA |
| H. sapiens |
ENSP00000462885 |
| C. quinquefasciatus |
CPIJ016569 |
| D. plexippus |
DPOGS207282PA |
| A. aegypti |
AAEL002083 |
| P. humanus |
PHUM044400-PA |
| P. humanus |
PHUM280650-PA |
| B. mori |
BGIBMGA001336-TA |
| H. melpomene |
HMEL015763-PA |
| N. vitripennis |
NV16386-PA |
| H. melpomene |
HMEL011392-PA |
| A. gambiae |
AGAP012045 |
| P. vanderplanki |
Pv.01958 |
| D. plexippus |
DPOGS204857PA |
| B. mori |
BGIBMGA012013-TA |
| H. sapiens |
ENSP00000460989 |
| N. vitripennis |
NV16387-PA |
| P. humanus |
PHUM565410-PA |
| B. mori |
BGIBMGA011746-TA |
| T. castaneum |
TC002368 |
| D. plexippus |
DPOGS214267PA |