MidgeBase gene description page [Pn.00872]
Outline
| Gene ID | Pn.00872 |
| Type | Protein coding gene |
| Scaffold | PnScaf866 |
| Start | 52577 |
| End | 55687 |
| Direction | + |
Sequence
Transcript: 1524 (bp)
ATGACGCAACAAAGGTTGAACTCTGTGCAAGAGTTTTATAAGGACAAGACGATTTTCATCACGGGCGCTAGTGGATTTATGGGAAAAGTTTTGGTCGAGAAGTTGCTGTATTCGTGCTCGGATGTTAAACAGATTATAATCCTGATGAGAACGAAGAAGGGAAAGAGCGAGCAGGCGAGAGTGAAAGAGTTCGAGGCACTTCCCCTCTTCAAGCGAATCATGGAGGAGAAGCCCGAAGTCATGCGCAAGCTTCACGTAGTCTCGGGCGAAATTTCCGAGCTCAATTTGGGCTTGAGCGCCGCTCACATGCAATACGTCATCGACAACACAAACATCATCTTCCACGTGGCGGCATCGGTGCGCTTCACAGCACCGCTCCGGCAGAACATAATGACCAATCTGGTGGCGACCAAGGAAGCCATCGACCTCGCAAAGCGCGTGAAAAATCTCCTCATCATGGTGCACGTGTCGACGGCCTTCTGCAACGTCGAGTTCGACGAGAACGATGAGAAGATTCACGATGCCCCGGGCAAGCCGCTGAACCTCATCGAGCTCGCACAGCAGATGGATGAGAGCGCGATGTCTAGTCTCGAGGACCAGCTGCTGCCGCCGCATCCCAACACCTACACGTACACGAAGCGCCTAGCGGAGATTCTCGTGCGCGACGAGTTCGAGCGGTCGAAGCTGCCCGTGTGCATCGTGCGGCCGAGCATCGTTGGGCCGGCCTTCAAAGAGCCCATTCCTGGCTGGGTGGACTCGCTCAGTGCCGTCAGTGGAATTATTTTTGGCGTCGCGAAAGGACTGTTGCGCTGCATGGTCTTGGATCCGCACACAAATTTCGACTACATCGCTGTTGACCGTGCCATCAATGGCTTCATTATGGCGGCTAAACACGTCGCTACCACGCCACAAGCACGCGAAGAAGTAAAGGTGTTTAACCTGAACACACACAAGAACGCTCTTTTCACCTACCAACAGTTCTGGGACATCATGAAGACTCTCATCTTCAAGCTGGCATTCGTCGAGACGCTCTGGTACGTGAACCTCACGTTTACGCAGAGCGAAAAGTACTTCTGGTTCTGCGTCTACGCCTTCCAGCTGCTGCCCGCCTACCTCATGGACTTTGGCCTCATGATTCTCGGCAAGAAGCGCTATCTCGTCGACGCTCAACGCAAGATCATTCACTCGACATATTTGCTCAAGTTCTTCGCCACTCGACGCTGGAAGTTCCACACGAAGAACTTCGAGGATCTCACACTGACGCAGCAGGGAAATGAGTCCGAAATGTTCAATGTCGACACAAAGCAAATCGATTCGCGCGAGTATCTCGTCACGTGCGTACGTGGAGTGCGCGTTCAATTGTCTAAAGATCCACTCTCGACCACTCCAAAAGCAGTGCGAATGATGCGAGTATTCTTCGTGCTGGATTGCCTCGTGAAATTTATTTTCTTCTACTGGATAGCAAAAATATTCATGACACTCACGGGACTGTCGGAAGCGGTGAGCGGTTTGATTACGCGACCA
Protein: 508 (aa)
MTQQRLNSVQEFYKDKTIFITGASGFMGKVLVEKLLYSCSDVKQIIILMRTKKGKSEQARVKEFEALPLFKRIMEEKPEVMRKLHVVSGEISELNLGLSAAHMQYVIDNTNIIFHVAASVRFTAPLRQNIMTNLVATKEAIDLAKRVKNLLIMVHVSTAFCNVEFDENDEKIHDAPGKPLNLIELAQQMDESAMSSLEDQLLPPHPNTYTYTKRLAEILVRDEFERSKLPVCIVRPSIVGPAFKEPIPGWVDSLSAVSGIIFGVAKGLLRCMVLDPHTNFDYIAVDRAINGFIMAAKHVATTPQAREEVKVFNLNTHKNALFTYQQFWDIMKTLIFKLAFVETLWYVNLTFTQSEKYFWFCVYAFQLLPAYLMDFGLMILGKKRYLVDAQRKIIHSTYLLKFFATRRWKFHTKNFEDLTLTQQGNESEMFNVDTKQIDSREYLVTCVRGVRVQLSKDPLSTTPKAVRMMRVFFVLDCLVKFIFFYWIAKIFMTLTGLSEAVSGLITRP
| Type | Start | End | Length |
| CDS |
52577 |
52780 |
204 |
| CDS |
53742 |
54451 |
710 |
| CDS |
54609 |
54848 |
240 |
| CDS |
54914 |
55045 |
132 |
| CDS |
55106 |
55231 |
126 |
| CDS |
55573 |
55684 |
112 |
| intron |
52781 |
53741 |
961 |
| intron |
54452 |
54608 |
157 |
| intron |
54849 |
54913 |
65 |
| intron |
55046 |
55105 |
60 |
| intron |
55232 |
55572 |
341 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_726498 |
CG30427, isoform C [Drosophila melanogaster] gb|AAM70799.1| CG30427, isoform C [Drosophila melanogaster] |
1e-113 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
6.7e-10 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
2.5e-07 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.12 |
| Pfam |
PF03015.14 |
Male sterility protein |
1.9e-20 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.00013 |
| Pfam |
PF07993.7 |
Male sterility protein |
8.8e-67 |
| Pfam |
PF08659.5 |
KR domain |
0.15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00870 |
| Pn.10426 |
| Pn.09751 |
| Pn.04390 |
| Pn.09750 |
| Pn.09752 |
| Pn.00505 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000659-TA |
| D. melanogaster |
FBgn0043792 |
| H. melpomene |
HMEL012267-PA |
| H. melpomene |
HMEL009811-PA |
| A. mellifera |
GB18895-PA |
| P. vanderplanki |
Pv.01653 |
| P. vanderplanki |
Pv.01652 |
| P. vanderplanki |
Pv.08846 |
| S. invicta |
SI2.2.0_08200 |
| B. mori |
BGIBMGA006569-TA |
| A. aegypti |
AAEL014302 |
| A. gambiae |
AGAP003611 |
| P. vanderplanki |
Pv.14417 |
| P. vanderplanki |
Pv.00546 |
| P. vanderplanki |
Pv.07337 |
| D. plexippus |
DPOGS208129PA |
| P. vanderplanki |
Pv.03987 |
| P. vanderplanki |
Pv.07338 |
| D. plexippus |
DPOGS200094PA |
| T. castaneum |
TC000107 |
| P. humanus |
PHUM561380-PA |