MidgeBase gene description page [Pn.00870]
Outline
| Gene ID | Pn.00870 |
| Type | Protein coding gene |
| Scaffold | PnScaf866 |
| Start | 46646 |
| End | 49634 |
| Direction | + |
Sequence
Transcript: 1500 (bp)
ATGACTCAACAGCTGAACTCGGTGCAGGAGTTTTACAAAAACAAGACCATCTTCATAACGGGAGCGAGCGGCTTCATGGGCAAGGTGCTGGTTGAGAAACTGCTCTACTCTTGCTCGGAACTCAAGCAACTGATTGTGCTGATGCGAGTGAAGCGAGGCAAGAACGAGATGGCGAGAATCAAGGAGTTCGAGTCACTTCCCCTCTTCGGCCGCATCATGAGCGAGAAGCCGGAGGTGATGCGCAAGATCTCGGTGGTGTCGGGCGAGATTTGCGAGAAGAACTTGGGCATGAGCGACGCTCACTATCAGCACGTCATCGACAACGTCGACATCATCTTCCACGTCGCTGCGTCTGTGAAGTTCCAGGCGCCGCTGCGCGCCAACATTCTCACCAACTTGGTCGCGACCAAAGAGGTCCTCGAGATTGCGAAGCAGCTCAAGCATCTGACGGTGATGGTGCACGTGTCGACGGCCTTCTGCAACGTCGAGTTCAGCAAAGTCAACGAGATCGTCTACGAGGCGTGCGGGGAGCCGCTGAAGCTCATTGAGCTGGCGCACGAGATGGACGAGACGGCCATGGCGACCGTCGAGAAGAAGCTGCTCGGCCAGCATCCAAACACGTACACCTATACGAAGCGCCTGGCCGAGAACCTCGTCCGCAACGAGTTCGAGGTGTCGCGCTTGCCGATCTGCATCGTGCGGCCGAGCATCGTTGGGCCGACGCTGAGCGAGCCTTTTGCCGGCTGGGTCGACTCACTGAGCGCAGTAAACGGCATCAGCCTGGCCAGCAAGAAGGGCATCCTTCGCTGCATGCTCGCCGACCTGTCGGTCAACTACAACTTCATCCCGGTCGACCAGGCCATCAACGGCTTCATCATGGCCGCGAAAGTGTTCGGCACTGCCGAGAGAGAGCACAAGGAAATTCCTGTCTACAACGTCACAACGCACGAGCAAGCAGTCGTCGGCTACCAGAAGTTCTTCGACGTCTTCAACTCGCTCAAGTTCATGTACCCGCTGTCGGTGACGTTCTGGTACCCGAATGTGACATTCACGCAGAACAAGTACTACTACTGGTTCAACGTCATCCTCTTCCAATGGATTCCGGCCTACTTCATCGACATGATGCTCCTTCTCTTCGGCCGCAAGCGAATAATGGTCCGCGTGCAGAGGAAAATTGCGGGCGCCCTCGACGCCATAAAGTTCTTCGCCATGAAAAATTGGGACTTTAATACCGACAACTTTCACAATCTCACGAAAATACAGTCGAAGGAGGAGTACCAGATGTTCAATCTCGATACGAAGACCATCAACGCCGAGGAGTATTTCGAGAGCTCGATCGTTGGAGGACGCATCTATCAAGACGAGGATCCGCTCACTACCGTCCCGAAAGCCACCATTCTCATCCGCTTCCTCTATGGACTCGATCTGGCAGTGAAGTCATTTTTCTCGTATTTTGTGATCAGAAAGCTGCTGATGATTATTGGCCTCTCGCGATTTACC
Protein: 500 (aa)
MTQQLNSVQEFYKNKTIFITGASGFMGKVLVEKLLYSCSELKQLIVLMRVKRGKNEMARIKEFESLPLFGRIMSEKPEVMRKISVVSGEICEKNLGMSDAHYQHVIDNVDIIFHVAASVKFQAPLRANILTNLVATKEVLEIAKQLKHLTVMVHVSTAFCNVEFSKVNEIVYEACGEPLKLIELAHEMDETAMATVEKKLLGQHPNTYTYTKRLAENLVRNEFEVSRLPICIVRPSIVGPTLSEPFAGWVDSLSAVNGISLASKKGILRCMLADLSVNYNFIPVDQAINGFIMAAKVFGTAEREHKEIPVYNVTTHEQAVVGYQKFFDVFNSLKFMYPLSVTFWYPNVTFTQNKYYYWFNVILFQWIPAYFIDMMLLLFGRKRIMVRVQRKIAGALDAIKFFAMKNWDFNTDNFHNLTKIQSKEEYQMFNLDTKTINAEEYFESSIVGGRIYQDEDPLTTVPKATILIRFLYGLDLAVKSFFSYFVIRKLLMIIGLSRFT
| Type | Start | End | Length |
| CDS |
46646 |
46846 |
201 |
| CDS |
47799 |
48748 |
950 |
| CDS |
48822 |
48953 |
132 |
| CDS |
49027 |
49152 |
126 |
| CDS |
49541 |
49631 |
91 |
| intron |
46847 |
47798 |
952 |
| intron |
48749 |
48821 |
73 |
| intron |
48954 |
49026 |
73 |
| intron |
49153 |
49540 |
388 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_726498 |
CG30427, isoform C [Drosophila melanogaster] gb|AAM70799.1| CG30427, isoform C [Drosophila melanogaster] |
1e-120 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
1.8e-10 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
2.1e-09 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.036 |
| Pfam |
PF03015.14 |
Male sterility protein |
1.6e-23 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
2.2e-06 |
| Pfam |
PF07993.7 |
Male sterility protein |
2.7e-68 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10426 |
| Pn.00872 |
| Pn.09751 |
| Pn.04390 |
| Pn.09750 |
| Pn.09752 |
| Pn.00505 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000659-TA |
| D. melanogaster |
FBgn0043792 |
| H. melpomene |
HMEL012267-PA |
| H. melpomene |
HMEL009811-PA |
| A. mellifera |
GB18895-PA |
| P. vanderplanki |
Pv.01653 |
| P. vanderplanki |
Pv.01652 |
| P. vanderplanki |
Pv.08846 |
| S. invicta |
SI2.2.0_08200 |
| B. mori |
BGIBMGA006569-TA |
| A. aegypti |
AAEL014302 |
| A. gambiae |
AGAP003611 |
| P. vanderplanki |
Pv.14417 |
| P. vanderplanki |
Pv.00546 |
| P. vanderplanki |
Pv.07337 |
| D. plexippus |
DPOGS208129PA |
| P. vanderplanki |
Pv.03987 |
| P. vanderplanki |
Pv.07338 |
| D. plexippus |
DPOGS200094PA |
| T. castaneum |
TC000107 |
| P. humanus |
PHUM561380-PA |