MidgeBase gene description page [Pn.00839]
Outline
| Gene ID | Pn.00839 |
| Type | Protein coding gene |
| Scaffold | PnScaf842 |
| Start | 44335 |
| End | 44912 |
| Direction | + |
Sequence
Transcript: 501 (bp)
ATGGACAAGTTTTCGCTGATATCTGCTGGTCTCTTCTCGACCGCTGGCATCTGTGCGATTATTTCGCTCGCCAGCAGCGAGTGGATTGTTGAGATTGGCAACAACTCGAAGTATGGACTGATGTGGTCGTGTCTGACGCTAATCAACCGAAATCAGCAGATCTGCTACACGCCCGTCCTCTCGATCGAGTGGCTCATCACGCTCATCCTCATCTTCCTCGGCATAATTTGCATCACCACGGTTGTCATCCTGCTCATCGCGAGTCGCTGGGATAGAAACGTCATTTTCTACGCCCGCTGGATCGGATTCAGTGCAATGGTAGTCTTCTGCTTGGCGGCAGTTATTTTCCCACTGGGCTTCTACATCGAGGAAATCAATGGACTTCCGTTCCAACTGCCCAACAGCCATCAGGTTGGCATTAGCTACATCTTCTTCATTCTCGCACTCTGGATCACCGTGATATCGGAGCTGTTTGCTGGAAAAATCTGTCTGCCGCACTTT
Protein: 167 (aa)
MDKFSLISAGLFSTAGICAIISLASSEWIVEIGNNSKYGLMWSCLTLINRNQQICYTPVLSIEWLITLILIFLGIICITTVVILLIASRWDRNVIFYARWIGFSAMVVFCLAAVIFPLGFYIEEINGLPFQLPNSHQVGISYIFFILALWITVISELFAGKICLPHF
| Type | Start | End | Length |
| CDS |
44335 |
44391 |
57 |
| CDS |
44466 |
44909 |
444 |
| intron |
44392 |
44465 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_968039 |
PREDICTED: similar to CG14182 CG14182-PA [Tribolium castaneum] gb|EFA00462.1| hypothetical protein TcasGA2_TC003319 [Tribolium castaneum] |
3e-61 |
| Pfam |
PF00122.15 |
E1-E2 ATPase |
1.1 |
| Pfam |
PF08525.6 |
Opacity-associated protein A N-terminal motif |
1.7 |
| Pfam |
PF13903.1 |
PMP-22/EMP/MP20/Claudin tight junction |
0.0028 |
| Pfam |
PF06197.8 |
Protein of unknown function (DUF998) |
0.49 |
| Pfam |
PF10242.4 |
Lipoma HMGIC fusion partner-like protein |
0.0015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL003464 |
| B. mori |
BGIBMGA011686-TA |
| D. melanogaster |
FBgn0036922 |
| H. melpomene |
HMEL007787-PA |
| D. plexippus |
DPOGS213624PA |
| S. invicta |
SI2.2.0_07281 |
| H. sapiens |
ENSP00000454926 |
| C. quinquefasciatus |
CPIJ005035 |
| A. mellifera |
GB15542-PA |
| T. castaneum |
TC003319 |
| A. gambiae |
AGAP012207 |
| M. musculus |
ENSMUSG00000046096 |
| P. vanderplanki |
Pv.02866 |
| N. vitripennis |
NV14205-PA |
| P. humanus |
PHUM009510-PA |