MidgeBase gene description page [Pn.00782]
Outline
| Gene ID | Pn.00782 |
| Type | Protein coding gene |
| Scaffold | PnScaf795 |
| Start | 8010 |
| End | 11001 |
| Direction | - |
Sequence
Transcript: 1362 (bp)
ATGTCGTACGACGATGACTGGGAGACGGACGCCAGCTACGAGAACAAGGCGACCGAGGACGAGCTGCGATGGGGCAAGGGAGTCGACCGCGGAGCAGCCATCGACATGCAGAAGCTGATTGAGGAGACGGAAAAGGCGGACGACGACAAGAAGAAGAAACTCGTCGAGACCGGCATCACTGGCTCACACGGCTACGGCGGCAAGTTCGGCGTGCAGAAGGACCGCATGGACAAGTCAGCGCTCGGCCACGACTACGTCGGCAAGGTGGAGAAGCACGCGTCGCAGAAGGACTACAGCGAGGGCTTCGGCGGCAAGTTCGGCGTGAGCAAGGACAAAATGGACAAGTCGGCCGTCGGCTTCGACTACGTCGGCAAGGTGGAGAAGCACGACAGCCAGGCGGACTACAAGAAGGGCTTCGGCGGCAAGTTCGGGCTCGAGACGGACCGCATGGACAAGTCGGCGCACACGTTCCAGGAGCAGGTCGAGAAGGTCGGCACCAACTACCAGAAGGTCAAGCCCGACATCTCCGGCGCCAAGCCCTCCAATCTGAAGTCGCGCTTCGAGAACATGGCCATCCTCACCGAGGAGGAGACGAAGCAGCGCGCCGCCGTGCAGAGGAAACTGCGCGAGGAGAAGGACAAGATCGACAAGGAGCAGGCCGCCAAAGAGCATACGACGGAGGAGCCGACGAAGAACGTGACCAAGAAGGGCGCCATTGTGACGGGCCGCAACGAGAAAATCAGCAATGTCATCAACGTGTTCAACGCCCCGCCACCGACCGACGAATTCAAACCGGCTCCGAAGCAGCCGATAAAGCTCCCGAAGGCCGCGGTCGAAGAGCCGGCGGAGGTCGTGAAGCCGGACATCGTGTCGAGCACCGAGAGGCACGTGGACATGCCGGCGCACCAGCCAGTCTCAGCGATAGCTCAGCAGTTCAGCCAGCCGCCCGCTCAGCAGCCCGACATCAAGCGGCACTCAGTGGAGAGGGCGCACGAGCCGGAAAGAGTCGTGGAAGAGGCCAGGGAGGTGCCGAAAGAGGTCGCGGCTGTCGTTGAGGAGCCGATTCACGAGCCAGTTCCAGAGCCGACCGAGGTGATAGAGCAGGAGCTGATCGAGCAGCTGAAGAACGACAACGTTGGTGCAATCGAGGAGGAGGAGCAGTTCGTGCTGTCGCCCGACAATCCCGGCGTCACGGCAATCGCCCTCTACGACTACCAGGCGGCAGCCGAGGACGAGATTTCCTTCGATCCGGATGACTTGATCACGCACATCGACATGATCGACCCGGGCTGGTACAAAGGCCTGCACGCAAAAACCTACACTTACGGCCTCTTCCCTGCCAACTACGTGCAGATCCAGGAG
Protein: 454 (aa)
MSYDDDWETDASYENKATEDELRWGKGVDRGAAIDMQKLIEETEKADDDKKKKLVETGITGSHGYGGKFGVQKDRMDKSALGHDYVGKVEKHASQKDYSEGFGGKFGVSKDKMDKSAVGFDYVGKVEKHDSQADYKKGFGGKFGLETDRMDKSAHTFQEQVEKVGTNYQKVKPDISGAKPSNLKSRFENMAILTEEETKQRAAVQRKLREEKDKIDKEQAAKEHTTEEPTKNVTKKGAIVTGRNEKISNVINVFNAPPPTDEFKPAPKQPIKLPKAAVEEPAEVVKPDIVSSTERHVDMPAHQPVSAIAQQFSQPPAQQPDIKRHSVERAHEPERVVEEAREVPKEVAAVVEEPIHEPVPEPTEVIEQELIEQLKNDNVGAIEEEEQFVLSPDNPGVTAIALYDYQAAAEDEISFDPDDLITHIDMIDPGWYKGLHAKTYTYGLFPANYVQIQE
| Type | Start | End | Length |
| CDS |
8013 |
8180 |
168 |
| CDS |
8410 |
8802 |
393 |
| CDS |
9272 |
9400 |
129 |
| CDS |
9492 |
9973 |
482 |
| CDS |
10668 |
10753 |
86 |
| CDS |
10827 |
10917 |
91 |
| CDS |
10989 |
11001 |
13 |
| intron |
8181 |
8409 |
229 |
| intron |
8803 |
9271 |
469 |
| intron |
9401 |
9491 |
91 |
| intron |
9974 |
10667 |
694 |
| intron |
10754 |
10826 |
73 |
| intron |
10918 |
10988 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAA34397 |
Cortactin [Drosophila melanogaster] dbj|BAB01490.1| cortactin [Drosophila melanogaster] |
6e-97 |
| InterPro |
IPR001452 |
Src homology-3 domain |
|
| InterPro |
IPR003134 |
Hs1/Cortactin |
|
| InterPro |
IPR015503 |
Cortactin |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07653.12 |
Variant SH3 domain |
1e-06 |
| Pfam |
PF02218.10 |
Repeat in HS1/Cortactin |
5.9e-50 |
| Pfam |
PF00018.23 |
SH3 domain |
1.7e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000301843 |
| D. melanogaster |
FBgn0025865 |
| P. vanderplanki |
Pv.00288 |
| H. sapiens |
ENSP00000431421 |
| A. gambiae |
AGAP004625 |
| B. mori |
BGIBMGA010072-TA |
| A. aegypti |
AAEL011982 |
| M. musculus |
ENSMUSG00000031078 |
| H. sapiens |
ENSP00000439762 |
| H. melpomene |
HMEL015013-PA |
| H. sapiens |
ENSP00000365745 |
| C. quinquefasciatus |
CPIJ006351 |
| P. humanus |
PHUM488860-PA |
| C. quinquefasciatus |
CPIJ006350 |
| D. plexippus |
DPOGS214861PA |
| H. sapiens |
ENSP00000317189 |