MidgeBase gene description page [Pn.00767]
Outline
| Gene ID | Pn.00767 |
| Type | Protein coding gene |
| Scaffold | PnScaf792 |
| Start | 16876 |
| End | 19209 |
| Direction | + |
Sequence
Transcript: 1617 (bp)
ATGGAGATAAAATCAATTTTGTGGTTTCGTCACGGACTGAGAATCCACGATAATCCATCGCTAATGGAGGCGATCCAGCCGGAAGGTGCCAGTGTAACCTTTTATCCCGTTTTTATCTTTGACGGAATCACAGCGGGCACAAAACATGTCGGCTACAACCGAATGAAATTCCTGATGGAGTCCTTAGCCGACTTGGACGAGCAGTTTAGGAGAAATGGAGGTCGCGGCTTGCACGTTTTTCGGGGCGATCCCGTCGAAATTTTCACGAAACTTCATCGAGAGCTCGGCATCAATAAAATTTGCTTCGAACAAGACTGCGAGCCGATTTGGTACGAACGAGATCAGCGAGTGAAATTCATGTGCCAAGAGCTCGGTATTCAAGTTGTTGAGAGCGTCTCGCACACGCTTTGGAATCCGCTGGAAGTAATTCGAGTCAACGGAGGCTACCCGCCGCTGACTTATCAAATGTTTTTGCATACCATCAGCGTCATCGGAAATCCTCCAAGGCCAGTCAGCGAAAAACCGGATTTTGATCGAATCATCTTCGGTTCTATTCCTACGAATTTGCATACCGATCTCGGGTTGTTGAACTCGATACCAACACCCGAAGACTTTCTCATTCTGCCAGAAGCTGTGGGCTATCAAAAGTTTTTAGTGTGGCGGGGAGGAGAGACGAGAGCCTTAGAACAGTTACAGTTGCGACTGAAAGTGGAGCAAGAGGCGTTTTGCAAAGGAATTTATTTGCCAAATCAAGCAAATCCCGACCTGATTGGTGACTCAACTTCGATGTCTGCCGCTCTGAGATTCGGCTGTCTGTCCGTTAGAAAATTTTTCTACTGCATACACGACCTCTTCTGCGAGGTGAAGCAGAAAACGTTAAGCAACCTCCCCGGCGGTCATCACATCACCGGACAGTTAATATGGCGAGAGTATTTCTACACGATGAGCGTGCAGAATCCGAACTACGGGCAAATGAAAGACAATCCGATTTGCTTAGACATTCCTTGGACGACACTGAGCGATGAAGATGTCGCGAAATGGAAGGAGGGAAGAACTGGCTTTCCCATCATTGACGCCGCTATGCGACAAATTCTCACCGAAGGTTGGCTCCATCACACCTTACGAAATATTACCGCAACGTTTTTGACACGTACGGGCTTATGGGCGAGTTGGGAAGTCGGTCTTCAGTATTTCTTGAAGTACATGCTCGACGCTGATTGGTCAGTGTGCGCAGGCAACTGGATGTATGTGAGTTCGAGCGCCTTTGAGAAACTCCTGGACTCGTCGAAATTCGGCATCATTGCCCTGGCTTATCGGCTCGATCCGAAAGGCAATTATGTCAGACGCTACCTGCCGGAGTTACGCGACGTGCCAGACAGATTCGTTCACGAGCCATGGAAGATGTCATTAGAAATTCAAAAGAGCTCCCGTTGCATGCTAGACTTGGACTATCCGCGGCCCATGATCGATTTGACGCGCGCTATGCAAATTAACTCGCAGCGAATGAAAGAGATCCGAAATTCATTGATCGAAACTAAAACGCCGCATGTGCGTCCGTCAAACGACGACGAAGTTCGCACATTCTTCTGGATTGCTGAAGATGTCGCTCTAAAGTAC
Protein: 539 (aa)
MEIKSILWFRHGLRIHDNPSLMEAIQPEGASVTFYPVFIFDGITAGTKHVGYNRMKFLMESLADLDEQFRRNGGRGLHVFRGDPVEIFTKLHRELGINKICFEQDCEPIWYERDQRVKFMCQELGIQVVESVSHTLWNPLEVIRVNGGYPPLTYQMFLHTISVIGNPPRPVSEKPDFDRIIFGSIPTNLHTDLGLLNSIPTPEDFLILPEAVGYQKFLVWRGGETRALEQLQLRLKVEQEAFCKGIYLPNQANPDLIGDSTSMSAALRFGCLSVRKFFYCIHDLFCEVKQKTLSNLPGGHHITGQLIWREYFYTMSVQNPNYGQMKDNPICLDIPWTTLSDEDVAKWKEGRTGFPIIDAAMRQILTEGWLHHTLRNITATFLTRTGLWASWEVGLQYFLKYMLDADWSVCAGNWMYVSSSAFEKLLDSSKFGIIALAYRLDPKGNYVRRYLPELRDVPDRFVHEPWKMSLEIQKSSRCMLDLDYPRPMIDLTRAMQINSQRMKEIRNSLIETKTPHVRPSNDDEVRTFFWIAEDVALKY
| Type | Start | End | Length |
| CDS |
16876 |
16916 |
41 |
| CDS |
16983 |
17077 |
95 |
| CDS |
17228 |
17533 |
306 |
| CDS |
17612 |
17763 |
152 |
| CDS |
17963 |
18507 |
545 |
| CDS |
18618 |
18703 |
86 |
| CDS |
18815 |
19206 |
392 |
| intron |
16917 |
16982 |
66 |
| intron |
17078 |
17227 |
150 |
| intron |
17534 |
17611 |
78 |
| intron |
17764 |
17962 |
199 |
| intron |
18508 |
18617 |
110 |
| intron |
18704 |
18814 |
111 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321104 |
AGAP001958-PA [Anopheles gambiae str. PEST] sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1 gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae] gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR018394 |
Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal |
|
| InterPro |
IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
|
| InterPro |
IPR006050 |
DNA photolyase, N-terminal |
|
| InterPro |
IPR005101 |
DNA photolyase, FAD-binding/Cryptochrome, C-terminal |
|
| InterPro |
IPR002081 |
Cryptochrome/DNA photolyase, class 1 |
|
| Gene Ontology(BP) |
GO:0006281 |
DNA repair |
|
| Gene Ontology(MF) |
GO:0003913 |
DNA photolyase activity |
|
| Pfam |
PF03441.9 |
FAD binding domain of DNA photolyase |
8.5e-78 |
| Pfam |
PF00875.13 |
DNA photolyase |
8.9e-37 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ009455 |
| D. plexippus |
DPOGS210824PA |
| P. vanderplanki |
Pv.08505 |
| B. mori |
BGIBMGA007140-TA |
| H. melpomene |
HMEL012765-PA |
| A. aegypti |
AAEL004146 |
| A. gambiae |
AGAP001958 |
| D. melanogaster |
FBgn0025680 |