MidgeBase gene description page [Pn.00756]
Outline
| Gene ID | Pn.00756 |
| Type | Protein coding gene |
| Scaffold | PnScaf791 |
| Start | 45044 |
| End | 48344 |
| Direction | + |
Sequence
Transcript: 2919 (bp)
ATGGCGTTTAATTTCGACCAATTTAATAGCAATTCGTTAACGCAACGCGAAACAAGTGCAAGATCAAGTGAGGAGACTCAAATAGTGCCATCAGGATATGTGCAAATCAAGAAAAATGACGAAAAACAAATTTTTCAAAAATCCAAGATGAATCTTAATTTGCCTGCGAACATCAGTTTTCTCGCTGTTGCAAATGACTGGCTTGTGATAATTATGGCAAACCAACTGCTTTTTAGGCTGAACCTCAAGCAGCCCGACAAGCAATCAGAGGTTCCTCTCGAGAAATTCACTACAGGGCAGCGTGTTTCAAAAATGTTCCTTGATCCAACTGGAAATCATTTGCTCTTATCGCTCGTACCAAAATCATCTGGCTACAGCAACGAACTGATGTATTTGAACAAAAATAGCAATAAACCAAAGATTATCTCCAAATTTCGCGATCATGAAGTTACAGCAGTTGGCTTCAACTATGAGAACACATCGGAAATTACCACAGGAAGCATTCTGCTGGGAACGTCGAGAGGTTTGGTGTTCGAGGTTGAGATAGGATGTGAAGGCGATCGGCTCATTCAGCACAATTGGAAGCAGGTTTTTGATATCGGTCGAGGCGAAAATGGTCCCATCACGGGCATCGGAATTTTCAAAGCGACTGGAACAAACAACTTTATTGTTCTCATCTCGACTCTTGATCGCCTTTATAAGTTTCACGAGATTCTAAGAGTCTTCGACGACAAATTCCAATCGCTTCAAAATATCTTCACTCACTACCTTAACGTGCCTGAGGAAGCAAGAGACTACGAGCAACAGACAAGCAAACTGACCTACTCGCAAATGGACTTTATTATGGAGAAAAAATACCCGAAAGGCTTCGGCTGGCTCACAGAAGCGGGAATCTTTTACGGCGAACTGAACCAAATTGCTGACAATCCGAACTTTGTCATCAACAAGAAGACGTTGACCTTCCCGGAGCAAGACAACGACTATCGCACTGAAAGCTACATGTTGATGCACCAGAATCAAGCGCCAAGCTCATTTGTGCTCACTGACTTTCATCTCCTGCTTCAGTACTCTGACCACGTCACTGGCATTTCTCTTATCAACCATGAGGTCATCTACGATGAGTACTTTGCCGACCAGTACGGAAAGCTTATGGCGATAACCAAGGACATCAAGAACGGAAATATCTACACCTTCAGTAACAAGACCATTTTTAGATATCGGATCAACAATGAACAGCGGAACGTGTGGCGCATGTATTTGGACAAAAATGAGTTTGAGCTTGCAATGAAATACAGTCGCGACAACCCGGCTCATTACGATATTGTTCTGTCAAGAATCGGCGACGACTTGTACGAAAGAAGGCTCTTCATGGATGCCTCGAAGACTTACGCGAAAACTAAAAAGAGCTTCGAAGAGGTCACGCTGAAATTCATGCAGGTCGATCAAAACCTTCCCCTGATTTTCTATCTCAAAAGTCGTCTTAACGACCTCAATTCTACAGTCGAGCAGACGCAAGTAACAATGCTGATTGTCTGGATAATCGATCTCTACATGGCGGAAATTAATCGCTCGTCGATGACTTCGCTCGAACGACAAAAAGAGTTTGACGAGTTCATGCAACACCCGCTGGTGCAGAGCTGTCTCAAAGACAACCGAAAAGTGATTTACAACATAATTGCGTCACACGGAGACAATTACAATCTCACAGCGCTCACCACAATAAACGAGGACTATGATGAGGTCTTGAGTCATTACATTCAACAGAACGAGTATCGAGACGCGCTTGACACTCTGAAAATTCAAAAGAGAACTGATTTAATTTATTCCTTTGCACCCATCGTGATGGAGGAGTTGCCGAAGGAAACTGTCCAAATGTTCATGGAACGAGGTCGAGCGCTGAATGCTACGAAACTTCTGCCTTCCCTTCTCTGCCTGAAGAGCGACAAACATCGCGTCGAAATTATTCGCTACTTGGAGTTTGCGATTCACTCACTGAGTGTCCAGGATCAGTCGATCCACAATTATCTCATTCAGCTGTATGCGAAGTACAAGGAATGCGAGAAGCTCATGAGCTACTTCGACACACAGGGCAAGGACCTAAGCATGATACACTACGACGTGCACTATGCGCTGAGACTGTGCAAGGAGTTCGAAATCAAAGAGGCTTGTGTATTTTTGCTGTGCATCCTGGAGTTTTGGCAGCAGGCCGTTGAACTCGCTCTGACATTCAACTCGAAGCTCGCACAGCAAACTGCGTCTCAGCCACAGGATAAGGAGCTGAGAAGAAAGCTTTGGCTCACGATTGCAGAGCACGAAATCAAGGGCAAGGAGAACATTCAGGAAGCCCTCGAGCTGCTGAAGATTTGTGATTTGCTTCGCATAGAAGACCTGCTGCCGTTCTTTTCCGATTTCCAAAAGATAGACCACTTCAAAGAGGCGATTTGCGATTCGCTGAAGGAGTACAATTTGAAAATCCAGGAACAAAAGCGAGAAATGGAGGAGTGCGCGAAAGCGGCTGAAAACGTTCGAGAATCAATACAGTCCTTCAAAAATCGATCGGTGACCATTTCAGGGCAAGACAAGTGCTCGGGATGTGGCACTTTTCTACTACTCAAGCCTTTCTTCCTTTTCCCGTGCAGTCACAAGTTCCACGCCGATTGCCTCGAGATAAAACTCCTTGAATTGCTGACACCAGACGAGGCCATTAAGCTGATGAAGCTGAAGCAAAAACTCAACGTGCTCTCTCACCAGATCGAAACGTCGAGGAATCAAAACAACGCCATTCCAGAGCAAACGATCGCAACTCGCGATTTATTAAGACAAGATATTGAGAATATTCTAGCTGCTGAATGCACAATGTGTGGAAGTCTAATGATCCAGCAAATTGACAAGAAATTTCCGAGTTCGAAGGAAGAGTGG
Protein: 973 (aa)
MAFNFDQFNSNSLTQRETSARSSEETQIVPSGYVQIKKNDEKQIFQKSKMNLNLPANISFLAVANDWLVIIMANQLLFRLNLKQPDKQSEVPLEKFTTGQRVSKMFLDPTGNHLLLSLVPKSSGYSNELMYLNKNSNKPKIISKFRDHEVTAVGFNYENTSEITTGSILLGTSRGLVFEVEIGCEGDRLIQHNWKQVFDIGRGENGPITGIGIFKATGTNNFIVLISTLDRLYKFHEILRVFDDKFQSLQNIFTHYLNVPEEARDYEQQTSKLTYSQMDFIMEKKYPKGFGWLTEAGIFYGELNQIADNPNFVINKKTLTFPEQDNDYRTESYMLMHQNQAPSSFVLTDFHLLLQYSDHVTGISLINHEVIYDEYFADQYGKLMAITKDIKNGNIYTFSNKTIFRYRINNEQRNVWRMYLDKNEFELAMKYSRDNPAHYDIVLSRIGDDLYERRLFMDASKTYAKTKKSFEEVTLKFMQVDQNLPLIFYLKSRLNDLNSTVEQTQVTMLIVWIIDLYMAEINRSSMTSLERQKEFDEFMQHPLVQSCLKDNRKVIYNIIASHGDNYNLTALTTINEDYDEVLSHYIQQNEYRDALDTLKIQKRTDLIYSFAPIVMEELPKETVQMFMERGRALNATKLLPSLLCLKSDKHRVEIIRYLEFAIHSLSVQDQSIHNYLIQLYAKYKECEKLMSYFDTQGKDLSMIHYDVHYALRLCKEFEIKEACVFLLCILEFWQQAVELALTFNSKLAQQTASQPQDKELRRKLWLTIAEHEIKGKENIQEALELLKICDLLRIEDLLPFFSDFQKIDHFKEAICDSLKEYNLKIQEQKREMEECAKAAENVRESIQSFKNRSVTISGQDKCSGCGTFLLLKPFFLFPCSHKFHADCLEIKLLELLTPDEAIKLMKLKQKLNVLSHQIETSRNQNNAIPEQTIATRDLLRQDIENILAAECTMCGSLMIQQIDKKFPSSKEEW
| Type | Start | End | Length |
| CDS |
45044 |
45475 |
432 |
| CDS |
45536 |
45691 |
156 |
| CDS |
45891 |
46523 |
633 |
| CDS |
46589 |
48056 |
1468 |
| CDS |
48112 |
48341 |
230 |
| intron |
45476 |
45535 |
60 |
| intron |
45692 |
45890 |
199 |
| intron |
46524 |
46588 |
65 |
| intron |
48057 |
48111 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648749 |
vacuolar protein sorting 18 (deep orange protein) [Aedes aegypti] gb|EAT44395.1| vacuolar protein sorting 18 (deep orange protein) [Aedes aegypti] |
0.0 |
| InterPro |
IPR007810 |
Pep3/Vps18/deep orange |
|
| InterPro |
IPR000547 |
Clathrin, heavy chain/VPS, 7-fold repeat |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Pfam |
PF08201.6 |
BssC/TutF protein |
0.086 |
| Pfam |
PF05131.9 |
Pep3/Vps18/deep orange family |
2.3e-40 |
| Pfam |
PF00637.15 |
Region in Clathrin and VPS |
7.7e-11 |
| Pfam |
PF13639.1 |
Ring finger domain |
0.92 |
| Pfam |
PF10367.4 |
Vacuolar sorting protein 39 domain 2 |
0.01 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000220509 |
| A. mellifera |
GB17794-PA |
| A. gambiae |
AGAP000983 |
| A. mellifera |
GB10262-PA |
| B. mori |
BGIBMGA007137-TA |
| T. castaneum |
TC006604 |
| A. aegypti |
AAEL004237 |
| C. quinquefasciatus |
CPIJ015589 |
| P. vanderplanki |
Pv.15656 |
| H. melpomene |
HMEL012761-PA |
| C. quinquefasciatus |
CPIJ005021 |
| P. vanderplanki |
Pv.12711 |
| D. plexippus |
DPOGS210822PA |
| D. melanogaster |
FBgn0000482 |
| P. humanus |
PHUM429310-PA |
| N. vitripennis |
NV17240-PA |
| S. invicta |
SI2.2.0_10507 |
| M. musculus |
ENSMUSG00000034216 |