MidgeBase gene description page [Pn.00709]
Outline
| Gene ID | Pn.00709 |
| Type | Protein coding gene |
| Scaffold | PnScaf749 |
| Start | 39448 |
| End | 42748 |
| Direction | - |
Sequence
Transcript: 1536 (bp)
ATGAGCAGTAGAGCATTTTCTGGAGGAAGAACGTTCAAAGACGTTGTGATAGTGGCAGCAACTCGCACTCCTTTCGGATCATTTCAATCTGCTTTATCGCCGCTCTCAGCAGTTGAGCTCGGAGCTGCGTCCATTCAGTCAGCAATAAAGAGAGCTGGAGTCGCATTCGAAAGCGTCGATGAAGTGTTGATGGGAAACGTTTTGAGTGCAGCAATAGGCCAGGCTCCTGCGAGACAAGCCGCAATACTTTCAGGACTCCCGTCTTCAGTGTGCTGTACCACAATAAACAAAGTCTGTAGCAGTGGTTTAAAGTCAATCACATTAGCCGCACAAGCTCTCATGCTGGGTTGTGATCAAGAAGTCATTGTTGCGGGTGGGATGGAAAGCATGTCAAATGTGCCCTTTTACTTAAAGAGATCGCACGTGCCATACGGCGGAACTAATTTAATCGACGGAATTGTGCATGACGGTCTGCTGGATGCTTACAACAAGTTGCACATGGGAAATTGTGCGGAGAATATTGCAAAAAGACTTGGAATCACTCGCGAGGAGCAAGACAATTATGCTATTTTAAGCTATAAAAGATCAGCAGAAGCATGGAAGAAAAACATTTTTGACGATGAAATAACGCCAATTACGGTTCCTCAGGGAAAAAGGGGAAAACCAGCACAAATTATCGGTGAGGATGAAGAGTATAAGCGAGTGAATTTTGATCGCTTCGAAAGCTTGTCAACAGTTTTTCAAAAGGTGAATGGAACTATCACTGCTGGAAATGCATCTACACTAAATGATGGCGCCTGTGCCTTAGTTTTGATGACTGCCGAAGCAGCTGAAAAACACAATTGCAAACCACTTGCAAGAATCGTCAGTTTCGCAGACGCTGAAACCAATCCAGCCGACTTTCCCATTGCGCCAGCAATTGCAGTGCCTAAACTGCTGCAGCAATGCGGTATGCGACAAGAGGACGTTGCTCTATGGGAAATCAATGAAGCATTTTCTCTAGTCGCCCTTGCAAATATTAAACTGTTAGAGCTTGACAGCTCAAGAGTTAACATACACGGAGGTGCTGTGAGTTTAGGGCATCCATTAGGTGCGAGCGGTGCAAGACTAGTTGCTCACTTAGTTCACACCCTAAAAGAGGGTCAATATGGTTGTGCGACAATTTGCAATGGTGGTGGAGGCGCAAGCTCAATTTTGGTAGAAAAATTAGTTGATACAAAGCCAAGTAAATTGCCAGTCATAACTCTATACACACACGATTACTGCTCCCTTTGTGATGAACTCGTTGAGGAGCTTGAAGCAAAATTTAGTGGCCGCTATCAGCTACAGAAGGTGGACATAACGAAAAAGTCAAACTTAAAATACCTTAGACTATACCGACTCGATATACCGGTTGTGTTCCTCAATGAATGTTTCCGATCCGAAACAAATAAAAATATAGAGCCAAAGGAGGAGGAGGTGGTGGTGGTGGTGTTGGCAGCGGCGGCAGCGGCAACGGCGAGAAATATGATGGACGATGATCATAAAATTATACAA
Protein: 512 (aa)
MSSRAFSGGRTFKDVVIVAATRTPFGSFQSALSPLSAVELGAASIQSAIKRAGVAFESVDEVLMGNVLSAAIGQAPARQAAILSGLPSSVCCTTINKVCSSGLKSITLAAQALMLGCDQEVIVAGGMESMSNVPFYLKRSHVPYGGTNLIDGIVHDGLLDAYNKLHMGNCAENIAKRLGITREEQDNYAILSYKRSAEAWKKNIFDDEITPITVPQGKRGKPAQIIGEDEEYKRVNFDRFESLSTVFQKVNGTITAGNASTLNDGACALVLMTAEAAEKHNCKPLARIVSFADAETNPADFPIAPAIAVPKLLQQCGMRQEDVALWEINEAFSLVALANIKLLELDSSRVNIHGGAVSLGHPLGASGARLVAHLVHTLKEGQYGCATICNGGGGASSILVEKLVDTKPSKLPVITLYTHDYCSLCDELVEELEAKFSGRYQLQKVDITKKSNLKYLRLYRLDIPVVFLNECFRSETNKNIEPKEEEVVVVVLAAAAAATARNMMDDDHKIIQ
| Type | Start | End | Length |
| CDS |
39451 |
39578 |
128 |
| CDS |
41140 |
41339 |
200 |
| CDS |
41408 |
41717 |
310 |
| CDS |
41788 |
42468 |
681 |
| CDS |
42532 |
42748 |
217 |
| intron |
39579 |
41139 |
1561 |
| intron |
41340 |
41407 |
68 |
| intron |
41718 |
41787 |
70 |
| intron |
42469 |
42531 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR20829 |
hypothetical protein AND_19389 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR002155 |
Thiolase |
|
| InterPro |
IPR020616 |
Thiolase, N-terminal |
|
| InterPro |
IPR020613 |
Thiolase, conserved site |
|
| InterPro |
IPR020617 |
Thiolase, C-terminal |
|
| InterPro |
IPR016038 |
Thiolase-like, subgroup |
|
| InterPro |
IPR016039 |
Thiolase-like |
|
| InterPro |
IPR008554 |
Glutaredoxin-like |
|
| InterPro |
IPR020615 |
Thiolase, acyl-enzyme intermediate active site |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
|
| Pfam |
PF00109.21 |
Beta-ketoacyl synthase, N-terminal domain |
0.06 |
| Pfam |
PF05768.9 |
Glutaredoxin-like domain (DUF836) |
6.5e-11 |
| Pfam |
PF00108.18 |
Thiolase, N-terminal domain |
9.6e-93 |
| Pfam |
PF02803.13 |
Thiolase, C-terminal domain |
8.6e-43 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ019232 |
| D. plexippus |
DPOGS205286PA |
| S. invicta |
SI2.2.0_01114 |
| T. castaneum |
TC000365 |
| H. melpomene |
HMEL017484-PA |
| A. aegypti |
AAEL006634 |
| H. sapiens |
ENSP00000265838 |
| B. mori |
BGIBMGA011029-TA |
| N. vitripennis |
NV12039-PA |
| D. melanogaster |
FBgn0029969 |
| A. mellifera |
GB18952-PA |
| P. humanus |
PHUM080110-PA |
| P. vanderplanki |
Pv.12334 |
| A. gambiae |
AGAP011329 |
| M. musculus |
ENSMUSG00000032047 |