MidgeBase gene description page [Pn.00637]
Outline
| Gene ID | Pn.00637 |
| Type | Protein coding gene |
| Scaffold | PnScaf692 |
| Start | 97 |
| End | 2199 |
| Direction | + |
Sequence
Transcript: 1719 (bp)
ATGAATCAGACCAGCAAAATATTGTCACTACTTCTCCTCTTACTGCTGTGCTTCTATCAAAATTTCATTTCCGCATCGCCCCTTTTACCCTCCGCACCGAACCAATCTTCCACATCTCACAGAAGGCGAACGCGGTCGCAAATTGTTGCATGGAAACAGCCCGAAGATGACTGGAACATAACGAGCATTCCGCGCAGCATTTTACCTCACTTGGTGAATAAAAACCAAAGTCACACTTTGCCCGCGCCGGCAAACATCATTTACAGAACAGTCGACTCCGACGAGAGAATGCTGCAGAGATTTCACGAGATTAAGAACAACGTCACCGGAAGAACGCTGTGGACGAAGGCAGAGTCAGATCACCACTACTCGCCATTTTTCGACAAGGCACTCAAGCTCATGAACCTCCAGCAGGTCGCCTTCGAGATCGAGAACTCTGTCATGAGCAAGATGAGCTGTACTGCCTGCAAAGCCGGTGCGACTCTGCTGCAGCATTATATCAAGTCGGGAAAGAGCAAGGAGGAGATCATCAAGACCATCTACCAGTACTGCACGAACCTTCAGATCCAGTCGGCGCGCGTGTGCGAAGGTGTCAGCAACCTATTTGGAAATGAAGTGATTTACGTGCTGAAGCGAACGAATCTGGGTGCCGACGAGATTTGCAGTTTTATAATCGGAGACGCTTGTGGCGACATTTACAATCCGTATCACGAGTGGGAAATCGAATTGCCGCCAATACCGAAGCCGCCAACTCATGAACTGCCCATACCCAAAGAGAACGCGCCCTCATTCAAAGTTTTGCACTTGAGCGACACTCACTATGATCCCTACTACGCCGAAGGCAGCAACGCAGACTGCAATGAGCCACTCTGCTGTAGACACACGAACGGAAGACCGAGGCACGTCAACGCTGCTGCCGGCAAGTGGGGTGACTATCGCAAATGCGACATGCCAAAGCGAACGCTAGACCACATGTACAAGCACATCGCTGAGACGCACTCCGATATTGACTACATCATTTGGACCGGCGATCTTCCGCCCCACGACATCTGGAATCAGACAAAGGAGGAGAACTTGAAGGTCCTCAAGGAAACTGTGAAGCAAATGGCCGAAGTTTTCCCGGGCATTCCGATCTTCCCGGCCCTCGGCAACCACGAGAGCGCGCCAGTCAACAGCTTCCCTCCGCCGTACGTTCAGCAGGTTGACAGCTCAATCGCGTGGCTCTACGACGCTCTCGCCGAGGAGTGGCAAAAGTGGCTACCGCCTTCCGTCCAGTACACGATCAAACGAGGCGCCTTCTACTCGGTCCTCGTCCGGCCCGGCTTCAGAATCATCTCGATCAACATGAACTACTGCAATAACAAAAACTGGTGGCTGTTGCTCAACTCAACCGATCCGGCCACGCAGCTCCAGTGGATTATTTACGAGCTCCAGAGTGCAGAGTTTTCCAACGAAAAGGTCCACATCATCGGTCACATCCCGCCCGGACATCCCGACTGCTTGAAAATCTGGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCAGATGGTGATCACGACGCAACGACAAGACTGG
Protein: 573 (aa)
MNQTSKILSLLLLLLLCFYQNFISASPLLPSAPNQSSTSHRRRTRSQIVAWKQPEDDWNITSIPRSILPHLVNKNQSHTLPAPANIIYRTVDSDERMLQRFHEIKNNVTGRTLWTKAESDHHYSPFFDKALKLMNLQQVAFEIENSVMSKMSCTACKAGATLLQHYIKSGKSKEEIIKTIYQYCTNLQIQSARVCEGVSNLFGNEVIYVLKRTNLGADEICSFIIGDACGDIYNPYHEWEIELPPIPKPPTHELPIPKENAPSFKVLHLSDTHYDPYYAEGSNADCNEPLCCRHTNGRPRHVNAAAGKWGDYRKCDMPKRTLDHMYKHIAETHSDIDYIIWTGDLPPHDIWNQTKEENLKVLKETVKQMAEVFPGIPIFPALGNHESAPVNSFPPPYVQQVDSSIAWLYDALAEEWQKWLPPSVQYTIKRGAFYSVLVRPGFRIISINMNYCNNKNWWLLLNSTDPATQLQWIIYELQSAEFSNEKVHIIGHIPPGHPDCLKIWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQMVITTQRQDW
| Type | Start | End | Length |
| CDS |
97 |
169 |
73 |
| CDS |
244 |
485 |
242 |
| CDS |
549 |
705 |
157 |
| CDS |
777 |
1227 |
451 |
| CDS |
1401 |
2196 |
796 |
| intron |
170 |
243 |
74 |
| intron |
486 |
548 |
63 |
| intron |
706 |
776 |
71 |
| intron |
1228 |
1400 |
173 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001851485 |
sphingomyelin phosphodiesterase [Culex quinquefasciatus] gb|EDS33619.1| sphingomyelin phosphodiesterase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR004843 |
Metallophosphoesterase domain |
|
| InterPro |
IPR008139 |
Saposin B |
|
| InterPro |
IPR011160 |
Sphingomyelin phosphodiesterase |
|
| InterPro |
IPR011001 |
Saposin-like |
|
| InterPro |
IPR007856 |
Saposin-like type B, 1 |
|
| Gene Ontology(BP) |
GO:0006685 |
sphingomyelin catabolic process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0004767 |
sphingomyelin phosphodiesterase activity |
|
| Pfam |
PF12850.2 |
Calcineurin-like phosphoesterase superfamily domain |
0.027 |
| Pfam |
PF05184.10 |
Saposin-like type B, region 1 |
9.7e-06 |
| Pfam |
PF00149.23 |
Calcineurin-like phosphoesterase |
4.1e-26 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS203813PA |
| A. mellifera |
GB17174-PA |
| T. castaneum |
TC008366 |
| H. sapiens |
ENSP00000435350 |
| H. sapiens |
ENSP00000349203 |
| H. sapiens |
ENSP00000340409 |
| N. vitripennis |
NV15205-PA |
| A. aegypti |
AAEL003402 |
| P. humanus |
PHUM427830-PA |
| A. mellifera |
GB11607-PA |
| H. melpomene |
HMEL013322-PA |
| P. humanus |
PHUM615340-PA |
| T. castaneum |
TC005858 |
| P. vanderplanki |
Pv.05553 |
| D. melanogaster |
FBgn0034997 |
| P. humanus |
PHUM615350-PA |
| B. mori |
BGIBMGA003720-TA |
| N. vitripennis |
NV12130-PA |
| M. musculus |
ENSMUSG00000037049 |
| H. sapiens |
ENSP00000299397 |
| H. sapiens |
ENSP00000436278 |
| H. sapiens |
ENSP00000435950 |
| C. quinquefasciatus |
CPIJ010127 |
| H. sapiens |
ENSP00000434353 |
| A. gambiae |
AGAP011940 |
| S. invicta |
SI2.2.0_02923 |