MidgeBase gene description page [Pn.00587]
Outline
| Gene ID | Pn.00587 |
| Type | Protein coding gene |
| Scaffold | PnScaf649 |
| Start | 51382 |
| End | 52287 |
| Direction | - |
Sequence
Transcript: 714 (bp)
ATGTTGTGCTCGAAAATAAATTTATTTTCAAAACTGCCGTCAGTAAATGTGATTCCGGTAGCATTTCTCAAGAATTTTGTCCCTCCACCACGTTATGACCATGTCGAGTTCACCGATAGACCGAAGCTCAGGTTCTTTGATAAGGTGCCTCAATATCCACCTAACATGCGACCGCCAAAAATGCAAAAAAGACTACGATACATGCGAGGACCGGAAGAGGTTCATAATTTTCTCCTGCACGAGCAGTACGGAATCCAAGCTCTCGGCGGCGGACGGTTGAGATGGGGTCATTTAGAGATGCTTCGTCTGAGTATCGGTCGCAAGATGGACGTAAGCAGGATGTTTTGTATTTGGAGAGTTGATGCGCCTTGGCAGCCGGTTACCCGACGAGGACAAGGTCAACGTTTGGGTGGTGGAAAAGGAGCTATCGATCACTATGTCACGCCCGTGAAAGCTGGACGCATCATTGTCGAGCTCGGCGGCAAATGTGAGTTCAGGGAGGTGAAGGAGTTTCTTCAGAAATATGCAAATCAGCTGCCTTTCCCGGCTCGAGCAGTTTCACATGAAATACTCGAGGAGGAAAAGAAGCAAAAAGAGGAGCTGGAAAATTCCAACCTGAATCCCTACACTTTTAAGTACGTGGTGCAGAACAACCTCAGCGGCTGTCATCGCTGGCTTCGACCGATAGATCACAAGCAGTTTGGAAAGTTTGAA
Protein: 238 (aa)
MLCSKINLFSKLPSVNVIPVAFLKNFVPPPRYDHVEFTDRPKLRFFDKVPQYPPNMRPPKMQKRLRYMRGPEEVHNFLLHEQYGIQALGGGRLRWGHLEMLRLSIGRKMDVSRMFCIWRVDAPWQPVTRRGQGQRLGGGKGAIDHYVTPVKAGRIIVELGGKCEFREVKEFLQKYANQLPFPARAVSHEILEEEKKQKEELENSNLNPYTFKYVVQNNLSGCHRWLRPIDHKQFGKFE
| Type | Start | End | Length |
| CDS |
51385 |
51909 |
525 |
| CDS |
51974 |
52062 |
89 |
| CDS |
52122 |
52193 |
72 |
| CDS |
52260 |
52287 |
28 |
| intron |
51910 |
51973 |
64 |
| intron |
52063 |
52121 |
59 |
| intron |
52194 |
52259 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAA15945 |
EG:63B12.2 [Drosophila melanogaster] |
1e-89 |
| InterPro |
IPR000114 |
Ribosomal protein L16 |
|
| InterPro |
IPR016180 |
Ribosomal protein L10e/L16 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Gene Ontology(MF) |
GO:0019843 |
rRNA binding |
|
| Pfam |
PF00252.13 |
Ribosomal protein L16p/L10e |
4.6e-32 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL008202-PA |
| P. vanderplanki |
Pv.10943 |
| D. plexippus |
DPOGS214930PA |
| N. vitripennis |
NV12264-PA |
| T. castaneum |
TC012240 |
| T. castaneum |
TC001416 |
| H. sapiens |
ENSP00000300151 |
| C. quinquefasciatus |
CPIJ003976 |
| S. invicta |
SI2.2.0_09873 |
| D. melanogaster |
FBgn0023519 |
| P. humanus |
PHUM555760-PA |
| B. mori |
BGIBMGA006919-TA |
| M. musculus |
ENSMUSG00000024683 |
| A. gambiae |
AGAP004985 |
| A. mellifera |
GB13436-PA |