MidgeBase gene description page [Pn.00573]
Outline
| Gene ID | Pn.00573 |
| Type | Protein coding gene |
| Scaffold | PnScaf632 |
| Start | 541 |
| End | 5200 |
| Direction | - |
Sequence
Transcript: 3231 (bp)
ATGTTATCAGGACCGGCCGCAATCACGGGCCAACTGCCCGGACGCTCCTCCTACGCCAACAGCATCGACACCGACGTCTATGACCCGGCATCGGGGAGCATCTTCCAGAGCTACAAGAAGCACGACGACCTCAAGCAGATGCTGGACAGCAACAAGGACAGCCTGAAGCTGGAGGCGATGAAGCGCATCATCGGCATGATCGCGAAGGGGAAGGACGCGAGCGACCTGTTCCCCGCCGTCGTCAAGAACGTGGTGTCGAAGAACATCGAGGTGAAGAAGCTCGTGTACGTGTTTCTCGTGCGCTACGCCGAGGAGCAGCAGGACCTCGCGCTCCTCTCCATCTCGACCTTCCAGCGCGCCCTCAAGGACCCCAACCAGCTGATCCGCGCCAGCGCCCTGCGCGTCCTCTCCTCCATCCGCGTGTCGCTCATCGTGCCCATCGTCATGCTCGCCATCAAGGACGCCGCGCAGGACATGAGTCCCTACGTCCGCAAAACAGCCGCGCACGCCATCCCCAAGCTCTTCAGCCTCGACGCCGAGCAGAAGGACGAGCTGGTCGCCGTCATCGAGAAGCTCCTCTCCGACCGCACCACGCTGGTCGTCGGCTCCGCCGTCATGGCCTTCGAGGAGGTCTGTCCCGAGCGCATCGAGCTCATCCACAGAAACTTCCGGAAGCTGTGCAACCTGCTGGTGGACGTCGACGAGTGGGGCCAGCTGCTCATCATCAACATGCTCACGCGCTACGCACGCACGCAGTTCACCGACCCGAACCTCGAGGAGGAGATCGCGAGCGACCAGGAGGACAAGCCGTTCTACGACGGCAGCTCCGACTCGGGCGAGACGTTCGCGCACCGCAAGCCCGCCTACACGCTCGACGCCGACCACCGGCTGCTGCTGCGCCAGACGAAGCCGCTGCTGCAGAGCCGCAACGCCGCCGTCGTGATGGCCGTCGCGCAACTGTATCACCACGTGGCGCCGCGCAACGACGTCGCCACAGTCGCGAAGGCGCTGATTCGTCTGCTGCGCAGCCACACCGAGGTGCAGAGCGTGGTGCTGACGTGCATCGCGTCGATGACGCTCAGCCGCAAGGCCATCTTCGAGTCACACCTGCGCTCCTTCTTCGTGCGCACCTGCGATCCCACGCACGTGAAGCTCCTCAAGCTCGACATCATGACGAACCTGGCGAACGAGGCGAGCATCGCGGTCATCCTGCTCGAGTTCCAGACCTACATCGGCAGCAACGACCGCGACTTTGTGGCGGCGACCATCCAGGCGATCGGCCGGTGCGCCGCCACCATCGGCGAGGTCACCGACACGTGCCTCAGCGGGCTCGTGCACCTGCTCTCCAACCGCAACGAGTACGTCGTGGCCGAGTCTGTGGTGGTGATCAAGAAGCTGCTGCAGTCGCAGCACACCGAGCACCGGCGCATCATCACGCAGATGTCGAAGCTCCTCGACTTCATCACCGTGCCGGCGGCGCGCGCCGCCATCCTCTGGCTCATCGGCGAGTACAACGATCGTGTGCCGAAGATTGCGCCCGATGTCTTGCGCAAAATGGCGAAGTCCTTCGTCGATGAGGAGAATGGCGTGAAGCTGCAGGTGCTGAACCTGGCCGTGAAGCTCTTCCTCAACAACCCCCAGCAGACGGAGCTCTTGTGCGCGCACATCTTCAACCTCGCGCGCTACGACATCAACTACGACATCCGCGACAGGGCGCGCTTCCTGCGGCCCTTCATCCTGGGCGCCAAGAAGGACTCGCCTCTGTTCAGGAACGCGCGCCAAATCTTTCTCGCCACCAAGCCGGCGCCGCAGCTCGAGAGCAAGTACCAGGGACGCGAGAACTTCCAGCTCGGCTCCATGTCGCACTACCTCAACATGCGCGTCAACGGCTACCAGCCGCTGCCCGACTTCCCCGCCGTCGCGCCCGATCCCACCGTGCGCAACGTCGAGTCGCCGGAGGACGAGCGGCGCGGCTCAAGCGACACTCGCTCGACGGCGAAAGGCGCCGAGAAGAAGCTCGGAAGCGGGAAGAACAAGAAGAACTTTTACTCGGAGAGCGACAGCAGCGACAGCGACGGCGACGGCGACGAGAACGAAAATAAGAACAAGAAGAAGAAGAAGAAGAAGAAGTCGGTGAAAAACGAGGAGGAGAAGAAGAAGAAAAGCAGCAACAACAAAGTCGACGGCGATTCGTCGGAGGACAGCGAGAGCGACAGCGACAGCGACTCCTCCTCAGCTTCTTCTTCTTCCTCCTCCGCCGCCGCCTCGTCCTCTCCCCCCTCTTCTCGCTCCCCCTCCTCCTCCTCCTCTTCCTCGTCGTCGTCATCATCGGCCGAGAGCGACGACTCGGAGCCGGAGAGGCAAGAAACCGGCACCAAGCCACCGCCGCCGCCGCCAAAGTCGAACCTCGACCTCCTGCTCGATCTCGACGATGTCGCGCCCTCGACGACGGTCATGACGCCGTCGCTGGGCGGTTTCCTCACGCCGATGACGCCGACGCAGAGCGCGGGCCGGCGCATCGAGCTGTGCGGGCCGAGTTATGTGGCGCCGTCGGGCGGCGAGCTCCTCAACAAGGTCAACGGCTACGGGCTGGGCATCGCGTACAAGTTCACGCGCGCGCCGCACCTTTTCTCCTCGAACATGACGTCGATCGAGCTGCACTTCACGAACCACGCGAACGTGGAGCTGACGGACATTCGGTGCGGCAGCAAGAGCCTCGGCGCCGGCATGTCGATGAACGAGTTCGCGCCGATCGCGCAGCTGCAGCCGCGCCAGACGCTGATGGGCATCCTGGGCGTGGACTTTGGCGATTCGAGCCAGGCGGCCAACTTCGAGGTGCACTCGAGCGGCGGCGTCAGCCGCGTGAGCATCAAGCCGCCCATCGGCGAGCTCGTGCGCAGCGTGGTCGTGTCGGAGGCGCTGTTCAGGGAGGAGCGCGCGAAGCTGCGCGGCATGAGCGAGGCGACGTGCAGGGTGGCGCTGCGCGCGCAGCTCGAGGACCGCACGAGCCTGCGCCAGAGGATCTTCGAGGTGGCGAACGTGGCGGCCATTTTGCACGGCGACGGCGACGACCTGCTGCTGTTCGCGGGCCAGACGATGAACTCGAAGAGTCTGGTGCTTGTGACGGTGGATGTGACGTCGCGCGACACGGCCGTCGTGACGGTCAACTGCGAGAAGGTCGTGATCGGGTCGATTCTCATCAACGAGATTCGCGACGCCATCAAGAGGGCT
Protein: 1077 (aa)
MLSGPAAITGQLPGRSSYANSIDTDVYDPASGSIFQSYKKHDDLKQMLDSNKDSLKLEAMKRIIGMIAKGKDASDLFPAVVKNVVSKNIEVKKLVYVFLVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVSLIVPIVMLAIKDAAQDMSPYVRKTAAHAIPKLFSLDAEQKDELVAVIEKLLSDRTTLVVGSAVMAFEEVCPERIELIHRNFRKLCNLLVDVDEWGQLLIINMLTRYARTQFTDPNLEEEIASDQEDKPFYDGSSDSGETFAHRKPAYTLDADHRLLLRQTKPLLQSRNAAVVMAVAQLYHHVAPRNDVATVAKALIRLLRSHTEVQSVVLTCIASMTLSRKAIFESHLRSFFVRTCDPTHVKLLKLDIMTNLANEASIAVILLEFQTYIGSNDRDFVAATIQAIGRCAATIGEVTDTCLSGLVHLLSNRNEYVVAESVVVIKKLLQSQHTEHRRIITQMSKLLDFITVPAARAAILWLIGEYNDRVPKIAPDVLRKMAKSFVDEENGVKLQVLNLAVKLFLNNPQQTELLCAHIFNLARYDINYDIRDRARFLRPFILGAKKDSPLFRNARQIFLATKPAPQLESKYQGRENFQLGSMSHYLNMRVNGYQPLPDFPAVAPDPTVRNVESPEDERRGSSDTRSTAKGAEKKLGSGKNKKNFYSESDSSDSDGDGDENENKNKKKKKKKKSVKNEEEKKKKSSNNKVDGDSSEDSESDSDSDSSSASSSSSSAAASSSPPSSRSPSSSSSSSSSSSSAESDDSEPERQETGTKPPPPPPKSNLDLLLDLDDVAPSTTVMTPSLGGFLTPMTPTQSAGRRIELCGPSYVAPSGGELLNKVNGYGLGIAYKFTRAPHLFSSNMTSIELHFTNHANVELTDIRCGSKSLGAGMSMNEFAPIAQLQPRQTLMGILGVDFGDSSQAANFEVHSSGGVSRVSIKPPIGELVRSVVVSEALFREERAKLRGMSEATCRVALRAQLEDRTSLRQRIFEVANVAAILHGDGDDLLLFAGQTMNSKSLVLVTVDVTSRDTAVVTVNCEKVVIGSILINEIRDAIKRA
| Type | Start | End | Length |
| CDS |
544 |
2175 |
1632 |
| CDS |
2862 |
3798 |
937 |
| CDS |
4315 |
4894 |
580 |
| CDS |
5119 |
5200 |
82 |
| intron |
2176 |
2861 |
686 |
| intron |
3799 |
4314 |
516 |
| intron |
4895 |
5118 |
224 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001851063 |
Beta3 protein [Culex quinquefasciatus] gb|EDS33009.1| Beta3 protein [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR017108 |
Adaptor protein complex AP-3, beta subunit |
|
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| InterPro |
IPR002553 |
Clathrin/coatomer adaptor, adaptin-like, N-terminal |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006897 |
endocytosis |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0030117 |
membrane coat |
|
| Gene Ontology(CC) |
GO:0005794 |
Golgi apparatus |
|
| Gene Ontology(MF) |
GO:0008565 |
protein transporter activity |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF12717.2 |
non-SMC mitotic condensation complex subunit 1 |
1e-08 |
| Pfam |
PF04147.7 |
Nop14-like family |
8 |
| Pfam |
PF09073.5 |
BUD22 |
4.7 |
| Pfam |
PF01602.15 |
Adaptin N terminal region |
2.6e-166 |
| Pfam |
PF02985.17 |
HEAT repeat |
4.4e-05 |
| Pfam |
PF13513.1 |
HEAT-like repeat |
0.001 |
| Pfam |
PF03064.11 |
HSV U79 / HCMV P34 |
9.2 |
| Pfam |
PF13646.1 |
HEAT repeats |
9.9e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000261722 |
| S. invicta |
SI2.2.0_02186 |
| H. melpomene |
HMEL005838-PA |
| H. sapiens |
ENSP00000255194 |
| T. castaneum |
TC013609 |
| H. sapiens |
ENSP00000441961 |
| H. sapiens |
ENSP00000440984 |
| H. melpomene |
HMEL017886-PA |
| C. quinquefasciatus |
CPIJ009748 |
| H. sapiens |
ENSP00000438721 |
| N. vitripennis |
NV13459-PA |
| M. musculus |
ENSMUSG00000021686 |
| A. gambiae |
AGAP003035 |
| A. mellifera |
GB10579-PA |
| D. plexippus |
DPOGS201087PA |
| P. vanderplanki |
Pv.10205 |
| H. sapiens |
ENSP00000430597 |
| B. mori |
BGIBMGA007196-TA |
| P. humanus |
PHUM307640-PA |
| A. aegypti |
AAEL009039 |
| D. melanogaster |
FBgn0003210 |