MidgeBase gene description page [Pn.00456]
Outline
| Gene ID | Pn.00456 |
| Type | Protein coding gene |
| Scaffold | PnScaf494 |
| Start | 3822 |
| End | 5208 |
| Direction | + |
Sequence
Transcript: 699 (bp)
ATGTCATCGAAACACCGGCCAGTGACTCACTGCATTTTCGACATGGATGGACTGCTGTTGGACACAGAGTCGCTCTACACAGTGATGACCCAAAGCATCATCGACAAGTTTCACGAAAATCCCCGCAAAATTTACACGATCGACGTGCAAGCGCGGCTGTTGGGCGTCCCGATGATCGAGGAGGCCCGAATTATCACAAAGCTCTACGATCTGCCAATAACGGCCGAAAAGTACGTGGAAATGTCCAAGGAAATCATCCCGAAACTGATGCAGAACTGCGCGAAATGCAGAGGAGCGGAGGCGCTGGTCAGACACCTGCACGCCAGCAAAATTCCGATGTGTGTCGCGACTGCCAGCGCTGAGGACTCTTTCTTGGTGAAGTCGGCCAATCACAGGGACATTTTCGCGCTCTTCGATCACGTCGTGCTGGGAGGCAGCGACGCTGAGGTAGCAAATGGAAAGCCGGCGCCAGACATATTTTTAGTAGCTGCCCGGAGGTTTGCCGGCGACGTTAAGCCCGAAAATTGTCTTGTGTTCGAGGACTCGCCGGCTGGCGTCAAAGCAGCTCGAGCCGCCGGCATGCAGTGCGTCATGGTTCCCGACCCGAAAATCCCAGAAGAAAATAAACTCGAGGCCACAGTCGTGCTCGAGTCGCTCGACGACTTTCGACCAGAGGACTTTGGACTTCCGTGCAGAAAA
Protein: 233 (aa)
MSSKHRPVTHCIFDMDGLLLDTESLYTVMTQSIIDKFHENPRKIYTIDVQARLLGVPMIEEARIITKLYDLPITAEKYVEMSKEIIPKLMQNCAKCRGAEALVRHLHASKIPMCVATASAEDSFLVKSANHRDIFALFDHVVLGGSDAEVANGKPAPDIFLVAARRFAGDVKPENCLVFEDSPAGVKAARAAGMQCVMVPDPKIPEENKLEATVVLESLDDFRPEDFGLPCRK
| Type | Start | End | Length |
| CDS |
3822 |
3882 |
61 |
| CDS |
4401 |
4864 |
464 |
| CDS |
5032 |
5205 |
174 |
| intron |
3883 |
4400 |
518 |
| intron |
4865 |
5031 |
167 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662906 |
2-deoxyglucose-6-phosphate phosphatase [Aedes aegypti] gb|EAT45748.1| 2-deoxyglucose-6-phosphate phosphatase [Aedes aegypti] |
3e-67 |
| InterPro |
IPR006402 |
HAD-superfamily hydrolase, subfamily IA, variant 3 |
|
| InterPro |
IPR023214 |
HAD-like domain |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Pfam |
PF12710.2 |
haloacid dehalogenase-like hydrolase |
7.8e-05 |
| Pfam |
PF13242.1 |
HAD-hyrolase-like |
1.8e-08 |
| Pfam |
PF12574.3 |
120 KDa Rickettsia surface antigen |
0.1 |
| Pfam |
PF00702.21 |
haloacid dehalogenase-like hydrolase |
1.8e-09 |
| Pfam |
PF13419.1 |
Haloacid dehalogenase-like hydrolase |
3.3e-21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11371 |
| Pn.04495 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL014646-PA |
| D. plexippus |
DPOGS202413PA |
| P. humanus |
PHUM075900-PA |
| S. invicta |
SI2.2.0_04250 |
| D. plexippus |
DPOGS204969PA |
| H. sapiens |
ENSP00000430995 |
| H. melpomene |
HMEL009458-PA |
| P. vanderplanki |
Pv.05750 |
| D. melanogaster |
FBgn0019982 |
| T. castaneum |
TC014458 |
| B. mori |
BGIBMGA010238-TA |
| S. invicta |
SI2.2.0_09504 |
| H. melpomene |
HMEL009459-PA |
| H. sapiens |
ENSP00000441208 |
| T. castaneum |
TC000686 |
| H. sapiens |
ENSP00000406260 |
| B. mori |
BGIBMGA010237-TA |
| H. sapiens |
ENSP00000396452 |
| A. gambiae |
AGAP003372 |
| D. plexippus |
DPOGS204688PA |
| H. sapiens |
ENSP00000370467 |
| C. quinquefasciatus |
CPIJ010605 |
| B. mori |
BGIBMGA003439-TA |
| A. mellifera |
GB18738-PA |
| N. vitripennis |
NV16201-PA |
| H. melpomene |
HMEL006282-PA |
| A. aegypti |
AAEL003006 |
| P. vanderplanki |
Pv.07983 |
| M. musculus |
ENSMUSG00000048875 |
| P. vanderplanki |
Pv.06983 |