MidgeBase gene description page [Pn.00443]
Outline
| Gene ID | Pn.00443 |
| Type | Protein coding gene |
| Scaffold | PnScaf465 |
| Start | 5349 |
| End | 7704 |
| Direction | + |
Sequence
Transcript: 1476 (bp)
ATGAGGTTTCTGGTTGCGCTGTTGAGTGCGCTCGCGGTCGCGAGTGCCCAATTCAATCCCTACTGGTGGAGCGGCCGCAGCGGCATCGTTCATCTGTTCGAATGGAAATGGCCGGACATCGCCAACGAGTGCGAAAACTTCCTCGCGCCCAACGGCTTCGCCGGCGTCCAGATTTCGCCGCCCAGCGAGAACATCATTGCCAGCAATAGGCCGTGGTGGGAGCGCTATCAGCCGGTCAGCTATCAGCTCACGACACGTTCAGGAACGCGCGCCCAGCTCGCCAACATGATCAGCCGCTGCAATGCCGTCGGCGTGAGAATCTATGCCGATGCCGTCATCAACCACATGTCGGCCATTGGCGGCACAGGAACCGGAGGCTCAGTCAGCGACCGCGGAAATCTCAACTTTCCCGCCGTGCCCTACGGACGCGATGACTTCAATCCCGAGTGCGCAATCAACAACTACAATGACCGCAACCAAGTGCGAAACTGCTGGCTCGTCGGCTTGCCCGACCTGGCTCTCGGACGCACCTATGTGAGAGACAAAATCGTCGCCTACATGAACGACCTCATCAGCCTCGGTGTTGCCGGTTTCCGTGTTGATGCCGTCAAGCACATGTGGCCAGGCGACCTTCAGGTTATTTTCGGACGTCTTAACAATCTTAACACAGCTCACGGTTTCCCATCGAACGCCCGTCCTTTCATCACACAAGAAGTCATCGATTTGGGCGGCGAAGCCATTTCAAAGGACGAATACACGCATCTCGGCACAGTCACCGAGTTCAGATTCTCGGCCGAGATCGGTCGCGTCTTTAACGGCCGAGACTTGCTGAAATATCTCTACAACTTCGGGCCGGCTTGGGGATTCCTGCAATCCAATCTTGCCCTCACCTTCGTCGACAATCACGACAACCAACGAGGCCACGGTGCGGGCGGCGACAATGTTCTCACCTACAAGAAGCCTAAGCAGTACAAAATGGCGACCGCCTTCCACCTCGCATGGCCCTACGGGATTCCGCGCATCATGAGCAGCTTCACTTTCACGAACGGCGACCAAGGACCACCGGCCGACGCCAACGGCAACCTCCTCTCGCCCAACCCGAACGCCAACAACGTCTGCAGCAACGGCTGGGTATGCGAGCACCGCTGGCGCCAGATCTTCAACATGGTCAAGTTCAGGAACGCGGCCGCCGGCGCAGCCGTGGCCAACTGGTGGGAGAGCGGCAGCGGCCAGCAGATCGCCTTCTCGCGCGGCAACCGGGCCTTCATCGCCTTCAACCAGGACTCGAGCAACATGAACGTCAACATCAACACCGGACTGCCAGCTGGCACCTACTGCGACGTCGCGAGCGGAATCAAGAGCGGCACCTCGTGCACCGGCAAGAGCGTCGTCGTCGGCAGTAACGGCTTCGGACAAATCGTCATCAACACCGGCGATGCCGAGGGCTTCTTGGCCCTGCACATCGACGCACGCCTG
Protein: 492 (aa)
MRFLVALLSALAVASAQFNPYWWSGRSGIVHLFEWKWPDIANECENFLAPNGFAGVQISPPSENIIASNRPWWERYQPVSYQLTTRSGTRAQLANMISRCNAVGVRIYADAVINHMSAIGGTGTGGSVSDRGNLNFPAVPYGRDDFNPECAINNYNDRNQVRNCWLVGLPDLALGRTYVRDKIVAYMNDLISLGVAGFRVDAVKHMWPGDLQVIFGRLNNLNTAHGFPSNARPFITQEVIDLGGEAISKDEYTHLGTVTEFRFSAEIGRVFNGRDLLKYLYNFGPAWGFLQSNLALTFVDNHDNQRGHGAGGDNVLTYKKPKQYKMATAFHLAWPYGIPRIMSSFTFTNGDQGPPADANGNLLSPNPNANNVCSNGWVCEHRWRQIFNMVKFRNAAAGAAVANWWESGSGQQIAFSRGNRAFIAFNQDSSNMNVNINTGLPAGTYCDVASGIKSGTSCTGKSVVVGSNGFGQIVINTGDAEGFLALHIDARL
| Type | Start | End | Length |
| CDS |
5349 |
5796 |
448 |
| CDS |
5994 |
6165 |
172 |
| CDS |
6660 |
6881 |
222 |
| CDS |
6942 |
7010 |
69 |
| CDS |
7075 |
7148 |
74 |
| CDS |
7211 |
7701 |
491 |
| intron |
5797 |
5993 |
197 |
| intron |
6166 |
6659 |
494 |
| intron |
6882 |
6941 |
60 |
| intron |
7011 |
7074 |
64 |
| intron |
7149 |
7210 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAA03322 |
alpha-amylase [Ochlerotatus atropalpus] |
0.0 |
| InterPro |
IPR006046 |
Alpha amylase |
|
| InterPro |
IPR006589 |
Glycosyl hydrolase, family 13, subfamily, catalytic domain |
|
| InterPro |
IPR013780 |
Glycosyl hydrolase, family 13, all-beta |
|
| InterPro |
IPR015902 |
Glycoside hydrolase, family 13 |
|
| InterPro |
IPR006048 |
Alpha-amylase, C-terminal all beta |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR006047 |
Glycosyl hydrolase, family 13, catalytic domain |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00128.19 |
Alpha amylase, catalytic domain |
8.7e-19 |
| Pfam |
PF02806.13 |
Alpha amylase, C-terminal all-beta domain |
2.3e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.09075 |
| Pn.06196 |
| Pn.13007 |
| Pn.03120 |
| Pn.13008 |
| Pn.03119 |
| Pn.10627 |
| Pn.13009 |
| Pn.06326 |
| Pn.02336 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ801761 |
| M. musculus |
ENSMUSG00000093931 |
| H. sapiens |
ENSP00000397582 |
| A. gambiae |
AGAP012230 |
| H. sapiens |
ENSP00000359100 |
| B. mori |
BGIBMGA001876-TA |
| M. musculus |
ENSMUSG00000096770 |
| D. plexippus |
DPOGS200704PA |
| D. melanogaster |
FBgn0020506 |
| T. castaneum |
TC000937 |
| P. vanderplanki |
Pv.00824 |
| A. aegypti |
AAEL008452 |
| T. castaneum |
TC000938 |
| P. vanderplanki |
Pv.15192 |
| A. aegypti |
AAEL007673 |
| H. sapiens |
ENSP00000359096 |
| H. melpomene |
HMEL007948-PA |
| C. quinquefasciatus |
CPIJ005062 |
| T. castaneum |
TC000939 |
| T. castaneum |
TC000944 |
| A. aegypti |
AAEL013421 |
| H. melpomene |
HMEL011894-PA |
| D. plexippus |
DPOGS200705PA |
| N. vitripennis |
NV14966-PA |
| N. vitripennis |
NV15021-PA |
| A. mellifera |
GB18312-PA |
| P. vanderplanki |
Pv.16647 |
| D. melanogaster |
FBgn0000078 |
| P. vanderplanki |
Pv.00458 |
| P. vanderplanki |
Pv.07340 |
| H. sapiens |
ENSP00000433347 |
| T. castaneum |
TC000936 |
| D. melanogaster |
FBgn0000079 |
| M. musculus |
ENSMUSG00000074264 |
| C. quinquefasciatus |
CPIJ005065 |
| H. sapiens |
ENSP00000330484 |
| C. quinquefasciatus |
CPIJ018222 |
| T. castaneum |
TC000940 |
| B. mori |
BGIBMGA005240-TA |
| N. vitripennis |
NV15022-PA |
| D. plexippus |
DPOGS214663PA |
| C. quinquefasciatus |
CPIJ005064 |
| C. quinquefasciatus |
CPIJ005061 |
| C. quinquefasciatus |
CPIJ005725 |
| C. quinquefasciatus |
CPIJ801597 |
| C. quinquefasciatus |
CPIJ005060 |
| A. gambiae |
AGAP002317 |
| H. sapiens |
ENSP00000359097 |
| A. aegypti |
AAEL008456 |
| H. sapiens |
ENSP00000354610 |
| S. invicta |
SI2.2.0_13988 |
| M. musculus |
ENSMUSG00000096569 |
| M. musculus |
ENSMUSG00000070360 |
| A. aegypti |
AAEL007675 |
| A. gambiae |
AGAP002318 |
| P. vanderplanki |
Pv.02856 |
| B. mori |
BGIBMGA005239-TA |
| M. musculus |
ENSMUSG00000074268 |
| P. vanderplanki |
Pv.06697 |
| A. aegypti |
AAEL008451 |
| T. castaneum |
TC000941 |