MidgeBase gene description page [Pn.00442]
Outline
| Gene ID | Pn.00442 |
| Type | Protein coding gene |
| Scaffold | PnScaf464 |
| Start | 12301 |
| End | 17111 |
| Direction | + |
Sequence
Transcript: 2025 (bp)
ATGAAGATGTCAAAATTAATTCGAGCGTGCTGCACAGCTGATCATGTGCGAGAGTTTACTTGCGGTAAACTGTACTACAGAACATTCCTGCTCCAAGAGCACCATGAAGCACTCTTCGTGGGTTCCATGGATAAAGTTCTGAAGCTGCACTTAGACGACATAAGTAGGACGAATTGTGAGCGCGATCACATTCTAATAGAGCCGACGTCGAGCGATGTTCTCAACTGCGTTTCAAAGGGAAAGAGTCAGCTCTTTGACTGTCGCAATCACATTCGCGTGCTGCAGCCGATGGAGGGAAATCGTCTCTACATATGCGGAACTTATGCTCACAATCCCAAGGATCACGTCATCTTCACAAATCTCACGCGTTTGCCACGATCGGAGCTGCTGCCTGGCATTGGCTTTGGAATCGGCAAGTGCCCGTATGATCCGCTGGACAACTCCACTGCAATCTACGTTGAGAAGGGCAATCCCGGCAACCTGTCCGCACTGTACTCGGGAACGAATGCAGAGTTCACGAAGGCTGACGCCGTTATTTTCCGCGCTGAAATGTACAACATGACGACCGGTCGAAAGGAATACAATTTCAAGCGAACGCTCAAATACGACTCGAAATGGCTCGACAAGCCGAATTTCGTGGGATCTTTCGACATCGGCGAGTACGTTTACTTCTTTTTCCGCGAGACGGCAGTCGAGTACATTAATTGCGGCAAGGCCGTGTACTCGCGCGTCGCCCGCGTCTGCAAGAACGACATCGGCGGCAAGAACATTCTGAGTCAGAACTTTGCCACCTACCTGAAGGCGCGCCTCAACTGCAGCATCTCGGGCGAGTTTCCCTTCTACTTCAACGAGATCCAGTCGGTCTACCAGATCCCCACAGACAAGACCAAGTTCTATGCCACCTTCACCACCAGCACCAACGGCCTCGTCGGCTCCGCCGTCTGCAGCTTCGACATCGGCGAAATTCATGCGACGTTCAAGGGCAAGTTCAAGGAGCAGGCAAAGTCTGACTCTGCCTGGCTGCCGGTGCTGAACTCGAAGGTTCCTGAGCCGCGTCCAGGCACCTGCGTCCCCGACACATCCAACCTCCCCGACAACGTCCTCAACTTCATTCGCTCGCATCCGCTCATGGACAAGCCGGTGAATCACGAGCACAACAACCCCGTGTTTTACAAGCGCGACCTCGTATTCACGAAATTGGCCGTTGACAAAATACGCAATCAAATAACGAACCACGAGTTCAAAGTCTACTACGTCGGCACGAACAACGGCCGCATCTACAAGATCGTCCAGTTCACGAGCGAGGGCGAGTCGCGCTCGAAGCTCCTCGACATCTTCGAGATCGCGAAGAACGAGGCGATTCAGGTGATTGAGATCAGTCAGAAGTACAAGTCCCTCTACGTCTCAACCGACCACCGCATCAAGCAGATCGACCTGCAGATGTGCAGCCATCGTTACGACAGCTGCTTCCGATGCGTGAAGGATCCGTACTGCGGATGGGACCCGAACGCGAACGCCTGCAAGCCCTACGAGCTGGGATTATTGCAGGATGTTGCCAATGAGACAAACGATATTTGTGATTCGAGTGTGTCAAAGAACAAAATCATTGTAACATATGGACAGAGCATACACTTGGGATGCTTCGAGACAGTGCCGGAGATTCTGAGAGATCAACAAGTGGTGTGGTACCACCATTCGAAAGACAATGGACGCTACGAAATCAGATACAATGCCCACAAACACATCGAGACGACCGAGCGAGGATTAGTGATTGTGGCGGCGCACGAGAGCGACAGCGGCCGTTATGACTGTCATTTGGGTGGATCACTGCTGTGCAGCTACATCATAAGTGTCGATGCACACCGATGCACGGCGCCGAACAAGAGCAACGATTATCAGAAAATCTACGCCGACTGGTGTCACGAGTTTGAGAAATACAAGTCCGCAATGAAATTGTGGGAGAAGCGACAATCGCAATGCTCAACCCCTCAGAACTCCAGCAGCAATAATGAAATCCCAAAGAAC
Protein: 675 (aa)
MKMSKLIRACCTADHVREFTCGKLYYRTFLLQEHHEALFVGSMDKVLKLHLDDISRTNCERDHILIEPTSSDVLNCVSKGKSQLFDCRNHIRVLQPMEGNRLYICGTYAHNPKDHVIFTNLTRLPRSELLPGIGFGIGKCPYDPLDNSTAIYVEKGNPGNLSALYSGTNAEFTKADAVIFRAEMYNMTTGRKEYNFKRTLKYDSKWLDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRVARVCKNDIGGKNILSQNFATYLKARLNCSISGEFPFYFNEIQSVYQIPTDKTKFYATFTTSTNGLVGSAVCSFDIGEIHATFKGKFKEQAKSDSAWLPVLNSKVPEPRPGTCVPDTSNLPDNVLNFIRSHPLMDKPVNHEHNNPVFYKRDLVFTKLAVDKIRNQITNHEFKVYYVGTNNGRIYKIVQFTSEGESRSKLLDIFEIAKNEAIQVIEISQKYKSLYVSTDHRIKQIDLQMCSHRYDSCFRCVKDPYCGWDPNANACKPYELGLLQDVANETNDICDSSVSKNKIIVTYGQSIHLGCFETVPEILRDQQVVWYHHSKDNGRYEIRYNAHKHIETTERGLVIVAAHESDSGRYDCHLGGSLLCSYIISVDAHRCTAPNKSNDYQKIYADWCHEFEKYKSAMKLWEKRQSQCSTPQNSSSNNEIPKN
| Type | Start | End | Length |
| CDS |
12301 |
12340 |
40 |
| CDS |
12910 |
12997 |
88 |
| CDS |
13095 |
13146 |
52 |
| CDS |
13211 |
13279 |
69 |
| CDS |
13377 |
13481 |
105 |
| CDS |
14158 |
14295 |
138 |
| CDS |
14413 |
14545 |
133 |
| CDS |
14612 |
15197 |
586 |
| CDS |
15318 |
15654 |
337 |
| CDS |
16264 |
16427 |
164 |
| CDS |
16510 |
16662 |
153 |
| CDS |
16738 |
16846 |
109 |
| CDS |
17058 |
17108 |
51 |
| intron |
12341 |
12909 |
569 |
| intron |
12998 |
13094 |
97 |
| intron |
13147 |
13210 |
64 |
| intron |
13280 |
13376 |
97 |
| intron |
13482 |
14157 |
676 |
| intron |
14296 |
14412 |
117 |
| intron |
14546 |
14611 |
66 |
| intron |
15198 |
15317 |
120 |
| intron |
15655 |
16263 |
609 |
| intron |
16428 |
16509 |
82 |
| intron |
16663 |
16737 |
75 |
| intron |
16847 |
17057 |
211 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316666 |
AGAP006634-PA [Anopheles gambiae str. PEST] gb|EAA11400.4| AGAP006634-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR007110 |
Immunoglobulin-like |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR001627 |
Semaphorin/CD100 antigen |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Pfam |
PF08763.6 |
Voltage gated calcium channel IQ domain |
0.12 |
| Pfam |
PF01403.14 |
Sema domain |
5.6e-131 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
0.011 |
| Pfam |
PF13895.1 |
Immunoglobulin domain |
0.026 |
| Pfam |
PF01437.20 |
Plexin repeat |
0.00081 |
| Pfam |
PF07686.12 |
Immunoglobulin V-set domain |
0.0015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC001219 |
| A. aegypti |
AAEL013589 |
| P. vanderplanki |
Pv.08232 |
| H. melpomene |
HMEL004818-PA |
| P. vanderplanki |
Pv.06722 |
| B. mori |
BGIBMGA008512-TA |
| H. melpomene |
HMEL012023-PA |
| A. gambiae |
AGAP006636 |
| C. quinquefasciatus |
CPIJ017234 |
| B. mori |
BGIBMGA000941-TA |
| N. vitripennis |
NV17440-PA |
| S. invicta |
SI2.2.0_06809 |
| D. plexippus |
DPOGS206619PA |
| D. melanogaster |
FBgn0011260 |
| D. plexippus |
DPOGS216011PA |
| A. gambiae |
AGAP006634 |
| A. aegypti |
AAEL005993 |
| A. mellifera |
GB16014-PA |
| D. melanogaster |
FBgn0264273 |
| B. mori |
BGIBMGA008511-TA |
| P. humanus |
PHUM307950-PA |