MidgeBase gene description page [Pn.00414]
Outline
| Gene ID | Pn.00414 |
| Type | Protein coding gene |
| Scaffold | PnScaf434 |
| Start | 7276 |
| End | 7976 |
| Direction | - |
Sequence
Transcript: 327 (bp)
ATGGACGAGGAAGACAAAATTTCCGACAGCGAGAACCAGACAAAACCCGAAAAGATGTTTACGCTCAAAAGGTGGAACAGCGTGGCTATGTGGTCGTGGGATTGCTCGACCGACACCTGCGCTATCTGCAGAGTTCAGGTGATGGACGCTTGCTTGAGATGCCAGGCCGAGTCGAAGAAGGATGTCACGAACAAGGATGTGACTTGTGTTGTTTGCTGGGGAGAGTGCAACCACAGCTTCCACCACTGCTGCATAAGCTTGTGGGTGAAGCAGTCGAATAGATGTCCGCTTTGTCAGCAGGAATGGAGCATCCAGCGGTTGTCGAGT
Protein: 109 (aa)
MDEEDKISDSENQTKPEKMFTLKRWNSVAMWSWDCSTDTCAICRVQVMDACLRCQAESKKDVTNKDVTCVVCWGECNHSFHHCCISLWVKQSNRCPLCQQEWSIQRLSS
| Type | Start | End | Length |
| CDS |
7279 |
7348 |
70 |
| CDS |
7436 |
7481 |
46 |
| CDS |
7546 |
7618 |
73 |
| CDS |
7839 |
7976 |
138 |
| intron |
7349 |
7435 |
87 |
| intron |
7482 |
7545 |
64 |
| intron |
7619 |
7838 |
220 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315566 |
AGAP005562-PA [Anopheles gambiae str. PEST] gb|EAA11465.4| AGAP005562-PA [Anopheles gambiae str. PEST] |
9e-39 |
| InterPro |
IPR001841 |
Zinc finger, RING-type |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR024766 |
Zinc finger, RING-H2-type |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF13923.1 |
Zinc finger, C3HC4 type (RING finger) |
0.16 |
| Pfam |
PF12678.2 |
RING-H2 zinc finger |
1.3e-25 |
| Pfam |
PF04423.9 |
Rad50 zinc hook motif |
0.18 |
| Pfam |
PF13639.1 |
Ring finger domain |
3.3e-05 |
| Pfam |
PF12861.2 |
Anaphase-promoting complex subunit 11 RING-H2 finger |
9.1e-14 |
| Pfam |
PF00097.20 |
Zinc finger, C3HC4 type (RING finger) |
0.0018 |
| Pfam |
PF13920.1 |
Zinc finger, C3HC4 type (RING finger) |
0.03 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP005562 |
| D. melanogaster |
FBgn0044020 |
| C. quinquefasciatus |
CPIJ004519 |
| P. vanderplanki |
Pv.03817 |
| M. musculus |
ENSMUSG00000048185 |
| A. aegypti |
AAEL000588 |
| D. plexippus |
DPOGS203663PA |
| H. sapiens |
ENSP00000273480 |
| P. humanus |
PHUM616000-PA |
| H. melpomene |
HMEL006953-PA |
| T. castaneum |
TC000384 |
| A. mellifera |
GB16100-PA |