MidgeBase gene description page [Pn.00367]
Outline
| Gene ID | Pn.00367 |
| Type | Protein coding gene |
| Scaffold | PnScaf416 |
| Start | 7477 |
| End | 9923 |
| Direction | - |
Sequence
Transcript: 2160 (bp)
ATGCCGAGTTCAACAAGCATGGAGAACACGGGAAAGAAGAAGCTCTCGAAATATAAGCTTAAAATGCACAACATGTCTTATCCACTTTCACCGAGCAGCTATTGGCTATTTTTTGGAATTTTTATTCCTTTTTACTTTCCACTTCAAAGCGGAGAGGTGTTCATTCGTGTGATTGCAAAAGTAGCATTTTATAGCTTTCTCGTGTGGATAAGATTGTGCGTCATTACGAGATTTTTGCTAACGCTGATTTTAAAGCACAAGGGACTGATACTGGAAACGCGAGGGCAGCCGTCGACGAAGAAAACTGAAATTTACAAATATGTGCTGGAGAAGCTGAAAGGCTGGAACAAACCGCTTTTCTTCAGTTTCCAAAATGCACTTCCTCGCCTATCCGTGCCAAATCTCAAAACCACCATTGCCAAATATCTCGACTCAATACGCAGCTTCACAGACGACGAGAGCTTCGCTCGCATCAAAAAAGACGCAGAGACGTTTGAGAGCGGACTCGGAAAAAAGCTGCAGAGGAAACTGACGTTCAAGAGTTGGAGGGGCGAGAACTATGTGAGCGACTGGTGGGAGGAGTATCACTACTTGAGAGATCGATCACCTCTCATGTACGGCACAAGCATTTGCTTCACAGACAACTTCAACTCGGTCACGAGCAGTCAGTCGGCACGTGCGGCCAACATGATTCACGTGATGTTGAAATTCAGAGATAAAATTGTCAGTCAAGAGCTCGAGCCCATTTACGTTAGAAAATTGATACCGATTTGTGTGTGGCAGTATGAGAGAATCTTCAATTCGGTCAGAGAGCCGGGTGTCGAAACCGACAAGATTGTTCACCTCGAGGAGTCAAGGCACGTCGTTGTCATGCACAAGGGCTCGTTCTACAAGCTAGACGCATTCTTCAAAGACCAGATGCTCAATGCTGCCGACTTGCAGCACCAGATTGAGAAGATTCTTCAGCAAACAGAAACAACCTCCACCTCGGAGAAGCACTTGCCTGCACTGACTGCGTGGAACCGCGCGAAGTGGGCGGAAGTGAGGAAGGAATTTTTCTCGAGCGGTGTCAACAAGGAGTCGCTTGATCTCATTGAGAAAGCTGCCTTCGTGGTTTCGCTGGATGATGAGCCTTACAAATTCGATTTAGACTCCTCGCCGGAAGAGTTTGGCGATTATGAGAAGAAGCTGCTGGTCGGCAATGGCCACAACAGGTGGTTCGACAAAAGCCTTGTTCTGTGCGTTGGGAGCAACGGAAGAGTGGGCTTGCTGAACGAACATTCCATCACGGACGGATCAATCATCGCTCACTTCTTCGAGGAGTGCCTCATAGACGACTACTCGTGCTACGATGATGGCGGCAAACTGAAGGAGAAAGCTGAGAATAAATCGTCACTGCCCCAGCCAGAGAAGCTGGAATGGAACCTCCTTGGCATAGACGCGATCGAAATTGCTCACGAAGACGTTGTTAATGTCATTAAAAATGTCGATCACCAAGTGAAAATCCACAAGTCCTTCAGCCGAGGCTTCATGAAACAGTGCCAAGTATCGCCCGATGCCTTCATTCAAATGTCCTTCCAACTCGCCTACTACCGGCAGCACAAAAAGTTCTGCCTCACCTACGAGCCGGCGATGACGCGGCTTTTCCGCAAGGGTCGAACTGAAACAATCCGATCGTGCACTGCCGAGTCCTCCGAGTGGGTCAGGGCGATGGAAAGCAAAGGCGTCTCGAAGGATCAGAGGCTGAAGTTGTTCAAGAAGGCGTGCGAGAAGCACCACGAGTTGTCGATGGACTCGATGTTCGGAAAAGGCTGCGATCGCCATCTTTTTGCCCTCCAGATCTCCGCCAAGCTGAACGGCACCGAGTCGAGCTTCCTGAACGAGGCGTGCGGAGAGCCTTTCGCGATGCTCACAAGTCACATTCCGCACGGTCAAACTCCAAAAACTAGTCACGAGGCGAACGAGTTCTTTGTGAGCGCGGGAGGCGCTTTTCCGCCGGCTCATCACAAGGGCTACAGCATCTCGTACTATCCGTTCAACGATGAGCTTTTGTTCCTGCACGTATCGAGCATGAGGAACTGCAACTCGACCGACACTAAAAAACTGCTCGACGGCATTTGCCGCGCTCTTGCTGACATCAAGGAAATGTTAGCAACAAAG
Protein: 720 (aa)
MPSSTSMENTGKKKLSKYKLKMHNMSYPLSPSSYWLFFGIFIPFYFPLQSGEVFIRVIAKVAFYSFLVWIRLCVITRFLLTLILKHKGLILETRGQPSTKKTEIYKYVLEKLKGWNKPLFFSFQNALPRLSVPNLKTTIAKYLDSIRSFTDDESFARIKKDAETFESGLGKKLQRKLTFKSWRGENYVSDWWEEYHYLRDRSPLMYGTSICFTDNFNSVTSSQSARAANMIHVMLKFRDKIVSQELEPIYVRKLIPICVWQYERIFNSVREPGVETDKIVHLEESRHVVVMHKGSFYKLDAFFKDQMLNAADLQHQIEKILQQTETTSTSEKHLPALTAWNRAKWAEVRKEFFSSGVNKESLDLIEKAAFVVSLDDEPYKFDLDSSPEEFGDYEKKLLVGNGHNRWFDKSLVLCVGSNGRVGLLNEHSITDGSIIAHFFEECLIDDYSCYDDGGKLKEKAENKSSLPQPEKLEWNLLGIDAIEIAHEDVVNVIKNVDHQVKIHKSFSRGFMKQCQVSPDAFIQMSFQLAYYRQHKKFCLTYEPAMTRLFRKGRTETIRSCTAESSEWVRAMESKGVSKDQRLKLFKKACEKHHELSMDSMFGKGCDRHLFALQISAKLNGTESSFLNEACGEPFAMLTSHIPHGQTPKTSHEANEFFVSAGGAFPPAHHKGYSISYYPFNDELLFLHVSSMRNCNSTDTKKLLDGICRALADIKEMLATK
| Type | Start | End | Length |
| CDS |
7480 |
8157 |
678 |
| CDS |
8221 |
8356 |
136 |
| CDS |
8413 |
9427 |
1015 |
| CDS |
9524 |
9848 |
325 |
| CDS |
9918 |
9923 |
6 |
| intron |
8158 |
8220 |
63 |
| intron |
8357 |
8412 |
56 |
| intron |
9428 |
9523 |
96 |
| intron |
9849 |
9917 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_523685 |
withered, isoform A [Drosophila melanogaster] ref|NP_724940.1| withered, isoform B [Drosophila melanogaster] gb|AAF58786.1| withered, isoform B [Drosophila melanogaster] gb|AAF58785.2| withered, isoform A [Drosophila melanogaster] gb|AAQ22513.1| LD31742p [Drosophila melanogaster] |
0.0 |
| InterPro |
IPR000542 |
Acyltransferase ChoActase/COT/CPT |
|
| Gene Ontology(MF) |
GO:0016746 |
transferase activity, transferring acyl groups |
|
| Pfam |
PF00755.15 |
Choline/Carnitine o-acyltransferase |
5.3e-162 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00374 |
| Pn.00539 |
| Pn.00366 |
| Pn.00368 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL005458 |
| P. humanus |
PHUM022280-PA |
| H. sapiens |
ENSP00000376303 |
| H. sapiens |
ENSP00000446042 |
| S. invicta |
SI2.2.0_15856 |
| A. mellifera |
GB11897-PA |
| C. quinquefasciatus |
CPIJ005612 |
| N. vitripennis |
NV13327-PA |
| H. sapiens |
ENSP00000265641 |
| H. sapiens |
ENSP00000312189 |
| H. sapiens |
ENSP00000353945 |
| H. sapiens |
ENSP00000385486 |
| P. vanderplanki |
Pv.09849 |
| H. sapiens |
ENSP00000384465 |
| M. musculus |
ENSMUSG00000007783 |
| M. musculus |
ENSMUSG00000024900 |
| H. sapiens |
ENSP00000346138 |
| P. vanderplanki |
Pv.08096 |
| D. melanogaster |
FBgn0261862 |
| P. vanderplanki |
Pv.11018 |
| H. sapiens |
ENSP00000439084 |
| P. vanderplanki |
Pv.09850 |
| H. sapiens |
ENSP00000379011 |
| P. vanderplanki |
Pv.09851 |
| A. gambiae |
AGAP010164 |
| H. sapiens |
ENSP00000446108 |
| H. sapiens |
ENSP00000410966 |
| H. sapiens |
ENSP00000319343 |
| H. sapiens |
ENSP00000295404 |
| H. melpomene |
HMEL014078-PA |
| H. sapiens |
ENSP00000414713 |
| H. sapiens |
ENSP00000365803 |
| A. mellifera |
GB18503-PA |
| H. sapiens |
ENSP00000409342 |
| B. mori |
BGIBMGA013317-TA |
| D. plexippus |
DPOGS203036PA |
| T. castaneum |
TC002462 |