MidgeBase gene description page [Pn.00358]
Outline
| Gene ID | Pn.00358 |
| Type | Protein coding gene |
| Scaffold | PnScaf402 |
| Start | 4829 |
| End | 5325 |
| Direction | - |
Sequence
Transcript: 375 (bp)
ATGTCTCTCGCCATGAAACCAAAGTCGGAAATGACACCGGAGGAGCTGCAAAAGCTCGAGGAAGAAGAATTCAACACCGGCCCGCTTAGTGTACTCACTCAATCAGTAAAGAACAACACTCAAGTATTGATAAACTGCCGAAACAACAAGAAACTATTGGGCCGCGTAAAAGCATTCGATCGTCACTGCAATATGGTCCTTGAGAACGTAAAAGAAATGTGGACTGAAGTTCCAAAGAGCGGCAAAGGCAAGAAGAAGGTAAAACCGGTCAGCAAGGATCGATACATAAGCAAAATGTTTCTGCGAGGAGACTCTGTCGTTCTCGTTCTCAGGAACCCGGGACAAACATCGCTCGCCGCCCAAGCGACTACAAAG
Protein: 125 (aa)
MSLAMKPKSEMTPEELQKLEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKVKPVSKDRYISKMFLRGDSVVLVLRNPGQTSLAAQATTK
| Type | Start | End | Length |
| CDS |
4832 |
5202 |
371 |
| CDS |
5322 |
5325 |
4 |
| intron |
5203 |
5321 |
119 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_397475 |
PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like isoform 1 [Apis mellifera] ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Bombus terrestris] ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Bombus impatiens] |
2e-48 |
| InterPro |
IPR001163 |
Ribonucleoprotein LSM domain |
|
| InterPro |
IPR010920 |
Like-Sm (LSM) domain |
|
| InterPro |
IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
|
| Pfam |
PF01423.17 |
LSM domain |
9.3e-19 |
| Pfam |
PF11661.3 |
Protein of unknown function (DUF2986) |
4 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000465216 |
| H. sapiens |
ENSP00000342374 |
| N. vitripennis |
NV12062-PA |
| S. invicta |
SI2.2.0_00701 |
| H. sapiens |
ENSP00000466152 |
| H. sapiens |
ENSP00000465952 |
| P. humanus |
PHUM600260-PA |
| T. castaneum |
TC012054 |
| H. melpomene |
HMEL013177-PA |
| A. aegypti |
AAEL009914 |
| M. musculus |
ENSMUSG00000040824 |
| D. plexippus |
DPOGS206276PA |
| B. mori |
BGIBMGA010723-TA |
| A. mellifera |
GB10555-PA |
| H. sapiens |
ENSP00000375798 |
| D. melanogaster |
FBgn0261789 |
| A. gambiae |
AGAP003936 |
| P. vanderplanki |
Pv.04401 |