MidgeBase gene description page [Pn.00287]
Outline
| Gene ID | Pn.00287 |
| Type | Protein coding gene |
| Scaffold | PnScaf352 |
| Start | 36841 |
| End | 38185 |
| Direction | + |
Sequence
Transcript: 1257 (bp)
ATGAGGCTCAACATCAAGGCCAGAGACTCATATGCACCAATATTTCATCGAGTAGCCGCATCGGAGAAGGAACAAAAGAAAAATGAATATTTCAACAAAACTCCCGTTTCTGATGAGCAAACAGCGGCAAAAGGCAATGAAATGGCTCTCGTTCTGTCGTCAACGACGCAATCTCAAAGTGACCAGTCCTCCGCTCTTTTGTCGGCGCTTCCGCCGTCTGCACACTCGCAAAATCAGCAACAGCTCATTCCGAAGAAGCCGTCGTCGATTCCTCGACCAAAATGGCACGCACCGTGGAAGTTATATCGAGTCATTAGCGGTCACTTGGGCTGGGTTAGGTGTGTTGCAGTTGAGCCCGGTAACGAGTGGTTCGCAACTGGCGCTGCCGATCGGGTTATTAAAATCTGGGATTTGGCAAGCGGAAAACTCAAACTGTCTCTGACCGGTCACGTCAGCACGGTTCGCGGCCTCGCCGTTAGTAGCCGTCATCCGTACTTGTTTTCCTGTGGTGAGGATCGTCAAGTAAAGTGCTGGGATCTTGAATACAACAAGGTCATACGACACTATCACGGACATTTGTCGGCTGTTTACACAATGGCTTTGCATCCGACACTCGACATTTTAGTGACTGCAGGTCGTGACTCGACAGCTCGCGTCTGGGACATGCGAACGAAGGCAAACATTCACACGCTCACTGGCCACACAAACACAGTGGCGAGCGTTGTAACGCAAGCTGTAAATCCTCAAATCATAACTGGAAGCCATGATTCGACTGTTCGCTTGTGGGACTTGGCTGCGGGAAAGAGTCTCTGTACGCTCACAAATCACAAAAAGAGCGTTCGAAGCGTAGTTCTTCATCCAACTCTTTACATGTTTGCATCCGCGAGTCCCGATAACATCAAGCAATGGCGCTGTCCCGAGGGAAACTTTGTCCAAAATCTTTCGGGTCACAACACGATCGTAAATTGCATGGCGGTGAATTCGGATGGAGTTCTCGTCTCAGGCGGTGACAATGGCAGCATGAATTTCTGGGACTGGAGAACAGGCTACAACTTCCAACGCTTCCAGGCTGCCGTTCAACCTGGTTCGATGGACTCTGAGGCTGGCATATTTTCGATGATTTTTGACCAGTCCGGCTCAAGATTGATTACGACCGAAGCCGATAAGACAATTAAAATCTATAAGGAAGACGACGAGGCAACAGAAGAAACAAATCCTGTCAACTGGAAGCCAGATATCATTAAGCGACGCAAATAC
Protein: 419 (aa)
MRLNIKARDSYAPIFHRVAASEKEQKKNEYFNKTPVSDEQTAAKGNEMALVLSSTTQSQSDQSSALLSALPPSAHSQNQQQLIPKKPSSIPRPKWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGAADRVIKIWDLASGKLKLSLTGHVSTVRGLAVSSRHPYLFSCGEDRQVKCWDLEYNKVIRHYHGHLSAVYTMALHPTLDILVTAGRDSTARVWDMRTKANIHTLTGHTNTVASVVTQAVNPQIITGSHDSTVRLWDLAAGKSLCTLTNHKKSVRSVVLHPTLYMFASASPDNIKQWRCPEGNFVQNLSGHNTIVNCMAVNSDGVLVSGGDNGSMNFWDWRTGYNFQRFQAAVQPGSMDSEAGIFSMIFDQSGSRLITTEADKTIKIYKEDDEATEETNPVNWKPDIIKRRKY
| Type | Start | End | Length |
| CDS |
36841 |
37619 |
779 |
| CDS |
37705 |
38182 |
478 |
| intron |
37620 |
37704 |
85 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001654681 |
striatin, putative [Aedes aegypti] gb|EAT37429.1| striatin, putative [Aedes aegypti] |
0.0 |
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR020472 |
G-protein beta WD-40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
5.9e-54 |
| Pfam |
PF11715.3 |
Nucleoporin Nup120/160 |
0.042 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS215570PA |
| M. musculus |
ENSMUSG00000027998 |
| T. castaneum |
TC001100 |
| D. melanogaster |
FBgn0030365 |
| S. invicta |
SI2.2.0_10707 |
| A. mellifera |
GB12039-PA |
| B. mori |
BGIBMGA010974-TA |
| H. sapiens |
ENSP00000377483 |
| C. quinquefasciatus |
CPIJ004561 |
| P. vanderplanki |
Pv.13580 |
| N. vitripennis |
NV13087-PA |
| H. sapiens |
ENSP00000303191 |
| A. aegypti |
AAEL010588 |
| H. melpomene |
HMEL010065-PA |
| H. sapiens |
ENSP00000424417 |
| A. gambiae |
AGAP005631 |
| P. humanus |
PHUM407120-PA |