MidgeBase gene description page [Pn.00284]
Outline
| Gene ID | Pn.00284 |
| Type | Protein coding gene |
| Scaffold | PnScaf352 |
| Start | 28274 |
| End | 29508 |
| Direction | - |
Sequence
Transcript: 1092 (bp)
ATGAGTGACAGTTCAGATGAGGATTTCAATGAAGGCTATGTTATGTATAGACATCGTCGAGAATGGAGTGACGTGCATCCCGTTAAGCAAAATGACGGACCGAACCCGATTGTTGCAATAGCATATTCTGAACGTTTTCTGGATGTTTACGATTATTTTCGAGCTGTATTAGCAACACAAGAAAAATCTGAGCGAGCGCTGGAACTTACAACCGATGCACTTCGACTGAATGCCGCAAACTACACTGTTTGGCAGTATAGACGAGAAATTCTACACGCACTCAAGAAAAACCTCTATGAGGAGCTTCAATACATAGCCGACGTGATTGAGGACAATCCAAAAAATTATCAAGTCTGGCATCATCGTCGCGTAATTGTCGAGTGGCTCAACGATGCCTCAAAGGAACTCGATCTCACGGAGAGAATCCTCGACCTGGACGCAAAAAATTATCACGCGTGGCAGCACAGACAGTGGGCAATCGAAACATTTAATCTTTTTGATAACGAGTTGGCTTTCATCGACAAGCTGCTCTCGACTGACGTGAGAAACAATTCCGCGTGGAATCAGCGCTTTTTTGTGCTTAAACATTTGGGCTTGACACGCGAAACTGTACAGCGTGAAATTCACTATGCCATGAACCGCATTCGACTTATCAAGAACAACGAGAGCTCTTGGAATTTTTTGAAGGGGCTGCTGGAATACGGCGATTACAATATTAGTCAATTTCCTGACGTCGAGCACTTCACCGAGGAGCTTTACGCCTCGGGAAACCGAGCTCCATATTTGCTTGCTTTTCTCGTCGACATGTACATCGAGAAAACCTTGCAAATTTACGAAGCAAATAGCTACGACGATCCCGAGGTCTTCGCAAGAAAGGTCGTTGAATTGTGCGAGATGCTGGCAAATCACTATGACACAATAAGATACAAGTATTGGAAGTACGTAATTCAAAAATTCAATGCCGATAAGGAGTTGGCGAAAACTGGTGGCAACGGTGCAAGCGGCGGTGTCAGCAATCAAGCCGAGGAAAGAATGGGCGAAGAGGATCTGTTAGTCAATAAAGAAACCGAGAGATTAAATGGTGAGGCGCAA
Protein: 364 (aa)
MSDSSDEDFNEGYVMYRHRREWSDVHPVKQNDGPNPIVAIAYSERFLDVYDYFRAVLATQEKSERALELTTDALRLNAANYTVWQYRREILHALKKNLYEELQYIADVIEDNPKNYQVWHHRRVIVEWLNDASKELDLTERILDLDAKNYHAWQHRQWAIETFNLFDNELAFIDKLLSTDVRNNSAWNQRFFVLKHLGLTRETVQREIHYAMNRIRLIKNNESSWNFLKGLLEYGDYNISQFPDVEHFTEELYASGNRAPYLLAFLVDMYIEKTLQIYEANSYDDPEVFARKVVELCEMLANHYDTIRYKYWKYVIQKFNADKELAKTGGNGASGGVSNQAEERMGEEDLLVNKETERLNGEAQ
| Type | Start | End | Length |
| CDS |
28277 |
28877 |
601 |
| CDS |
28947 |
29302 |
356 |
| CDS |
29374 |
29508 |
135 |
| intron |
28878 |
28946 |
69 |
| intron |
29303 |
29373 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657024 |
protein farnesyltransferase alpha subunit [Aedes aegypti] ref|XP_001657025.1| protein farnesyltransferase alpha subunit [Aedes aegypti] gb|EAT33950.1| protein farnesyltransferase alpha subunit [Aedes aegypti] gb|EAT33951.1| protein farnesyltransferase alpha subunit [Aedes aegypti] |
1e-120 |
| InterPro |
IPR002088 |
Protein prenyltransferase, alpha subunit |
|
| InterPro |
IPR008940 |
Protein prenyltransferase |
|
| Gene Ontology(BP) |
GO:0018342 |
protein prenylation |
|
| Gene Ontology(MF) |
GO:0008318 |
protein prenyltransferase activity |
|
| Pfam |
PF01239.17 |
Protein prenyltransferase alpha subunit repeat |
4.2e-50 |
| Pfam |
PF13376.1 |
Bacteriocin-protection, YdeI or OmpD-Associated |
0.063 |
| Pfam |
PF13961.1 |
Domain of unknown function (DUF4219) |
7.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000303423 |
| D. melanogaster |
FBgn0031633 |
| P. humanus |
PHUM420660-PA |
| C. quinquefasciatus |
CPIJ000805 |
| A. aegypti |
AAEL013783 |
| H. melpomene |
HMEL002558-PA |
| D. plexippus |
DPOGS203747PA |
| T. castaneum |
TC000297 |
| S. invicta |
SI2.2.0_09819 |
| A. mellifera |
GB10315-PA |
| H. sapiens |
ENSP00000434430 |
| P. vanderplanki |
Pv.08355 |
| M. musculus |
ENSMUSG00000015994 |
| N. vitripennis |
NV10315-PA |
| B. mori |
BGIBMGA011493-TA |
| A. aegypti |
AAEL014396 |
| A. gambiae |
AGAP011767 |