MidgeBase gene description page [Pn.00272]
Outline
| Gene ID | Pn.00272 |
| Type | Protein coding gene |
| Scaffold | PnScaf343 |
| Start | 13180 |
| End | 14033 |
| Direction | - |
Sequence
Transcript: 345 (bp)
ATGGTTACTCAAAAGAAGCAAAAAAAGGCTTTGGAGTCAATCAATGCCCGTTTGGCTCTTGTTATGAAATCGGGAAAGTTCTGCTTGGGTTACAAGCAAACTTTGAAAACTCTCCGTCAAGGCAAAGCAAAGTTGGTCATCATCGCTAACAACACCCCACACTTGAGAAAGTCAGAGATTGAATACTACGCAATGTTGGCCAAGACAGGAGTCCATCACTACAACGGTAACAACATTGAGTTGGGAACAGCCTGCGGTAAATACTTCCGCGTCTGCACACTCTCAATCACAGATGCCGGTGATTCGGACATCATCAGAACTCTTCCAGAAGCTCAAACTGGAAAC
Protein: 115 (aa)
MVTQKKQKKALESINARLALVMKSGKFCLGYKQTLKTLRQGKAKLVIIANNTPHLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKYFRVCTLSITDAGDSDIIRTLPEAQTGN
| Type | Start | End | Length |
| CDS |
13183 |
13360 |
178 |
| CDS |
13647 |
13792 |
146 |
| CDS |
14013 |
14033 |
21 |
| intron |
13361 |
13646 |
286 |
| intron |
13793 |
14012 |
220 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650291 |
60S ribosomal protein L30 [Aedes aegypti] ref|XP_001650519.1| 60S ribosomal protein L30 [Aedes aegypti] ref|XP_001650520.1| 60S ribosomal protein L30 [Aedes aegypti] gb|ABF18292.1| 60S ribosomal protein L30 [Aedes aegypti] gb|EAT43318.1| 60S ribosomal protein L30 [Aedes aegypti] gb|EAT43319.1| 60S ribosomal protein L30 [Aedes aegypti] gb|EAT43481.1| 60S ribosomal protein L30 [Aedes aegypti] gb|ABM68592.1| AAEL005085-PA [Aedes aegypti] |
2e-58 |
| InterPro |
IPR004038 |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 |
|
| InterPro |
IPR022991 |
Ribosomal protein L30e, conserved site |
|
| InterPro |
IPR000231 |
Ribosomal protein L30e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF13344.1 |
Haloacid dehalogenase-like hydrolase |
0.016 |
| Pfam |
PF01248.21 |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
1.6e-25 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000058600 |
| S. invicta |
SI2.2.0_12574 |
| H. sapiens |
ENSP00000429483 |
| D. plexippus |
DPOGS216087PA |
| P. humanus |
PHUM167080-PA |
| D. melanogaster |
FBgn0086710 |
| N. vitripennis |
NV16999-PA |
| A. mellifera |
GB12284-PA |
| P. vanderplanki |
Pv.16993 |
| H. melpomene |
HMEL006232-PA |
| A. gambiae |
AGAP003816 |
| H. sapiens |
ENSP00000428085 |
| H. sapiens |
ENSP00000287038 |
| B. mori |
BGIBMGA007795-TA |
| A. aegypti |
AAEL005085 |
| T. castaneum |
TC001524 |
| A. aegypti |
AAEL005220 |