MidgeBase gene description page [Pn.00259]
Outline
| Gene ID | Pn.00259 |
| Type | Protein coding gene |
| Scaffold | PnScaf326 |
| Start | 93216 |
| End | 93933 |
| Direction | + |
Sequence
Transcript: 573 (bp)
ATGTCTGAATATTGGTTGATATCAGCACCTGGCGACAAGACATGCCAACAAACATGGGAAACGATGAATAACGTCACGAGCAAGCAGAATAATCTGTGTGAAAACTTCAAATTTCACATCCCCGACCTCAAAGTTGGCACGCTCGATCAATTGGTCGGTCTCTCAGACGACTTGGGCAAGCTGGATTCGTTCGTCGAGCAAATCACCCGCAAGGTCGCCAATTATTTGGGTGACGTTCTCGAGGACCAGCGCGACAAGTTGATTGAAAATTTGCTGGCAAATAACACCGACTTGTCGCAGTATATTACACGATTTCAGTGGGACATGGCGAAGTATCCAATCAAGCAATCGTTGAGAAACATCGCCGACATCATTTCGAAGCAAGTCGGCCAAATTGACGCTGATTTGAAGACCAAATCGGCTGCCTACAATAGCTTGAAAGGAAATTTGCAGAACCTAGAAAAGAAGCAAACTGGAAGCTTATTGACTAGAAATCTTGCTGATTTAGTGAAGAAGGAACATTTCATCTTGGACTCGGAGTACTTGACAACGCTGCTCGTGATCGTTCCGAAG
Protein: 191 (aa)
MSEYWLISAPGDKTCQQTWETMNNVTSKQNNLCENFKFHIPDLKVGTLDQLVGLSDDLGKLDSFVEQITRKVANYLGDVLEDQRDKLIENLLANNTDLSQYITRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKTKSAAYNSLKGNLQNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPK
| Type | Start | End | Length |
| CDS |
93216 |
93501 |
286 |
| CDS |
93569 |
93755 |
187 |
| CDS |
93831 |
93930 |
100 |
| intron |
93502 |
93568 |
67 |
| intron |
93756 |
93830 |
75 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315870 |
AGAP005845-PA [Anopheles gambiae str. PEST] gb|EAA11948.4| AGAP005845-PA [Anopheles gambiae str. PEST] |
4e-99 |
| InterPro |
IPR004907 |
ATPase, V1 complex, subunit C |
|
| Gene Ontology(BP) |
GO:0015991 |
ATP hydrolysis coupled proton transport |
|
| Gene Ontology(CC) |
GO:0033180 |
proton-transporting V-type ATPase, V1 domain |
|
| Gene Ontology(MF) |
GO:0016820 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances |
|
| Pfam |
PF05659.6 |
Arabidopsis broad-spectrum mildew resistance protein RPW8 |
0.081 |
| Pfam |
PF03223.10 |
V-ATPase subunit C |
3.3e-94 |
| Pfam |
PF07889.7 |
Protein of unknown function (DUF1664) |
0.00018 |
| Pfam |
PF04799.8 |
fzo-like conserved region |
0.18 |
| Pfam |
PF07258.9 |
HCaRG protein |
0.012 |
| Pfam |
PF01875.12 |
Memo-like protein |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS215153PA |
| S. invicta |
SI2.2.0_11571 |
| P. vanderplanki |
Pv.08392 |
| C. quinquefasciatus |
CPIJ002067 |
| T. castaneum |
TC009631 |
| M. musculus |
ENSMUSG00000022295 |
| A. aegypti |
AAEL015594 |
| H. sapiens |
ENSP00000428204 |
| P. humanus |
PHUM039540-PA |
| A. aegypti |
AAEL005173 |
| H. sapiens |
ENSP00000430282 |
| A. gambiae |
AGAP005845 |
| A. mellifera |
GB11380-PA |
| B. mori |
BGIBMGA013964-TA |
| H. sapiens |
ENSP00000379203 |
| D. melanogaster |
FBgn0262511 |
| H. melpomene |
HMEL017374-PA |
| H. sapiens |
ENSP00000430129 |